Rmu_sc0006347.1_g000001

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006347.1
Physical Location & Seq
Forward (+)
229 .. 735
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006347.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atgggtcctcagagacgattaattatttatgttggatacgaatccccaacaattatccgctatttggaacccttgacaggcgatctctctaccgctagatttgtagattgtcactttgatgagacagtcttcccgtcgttagggggagataggaaaaatgattttccaagagaacggcaggaattgtcgtggtttgtccccactctgtctcattttgatcccctcacttcacaattgacgagatcacatataccagctgcaaatgtgcctgcaaggttaaaagtccccaataaggggcatggtgctgcagatagaggcactgcaaccacacttagtggaggtgtggttgaggccgtggctccccaaaggaagagggggaggccactttgtttgattgacactcacccaaggaagaagggcgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.67

Weight (kDa)

9.56

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 58, 93
AclWI GGATC 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 3 cut(s) 7, 116, 213
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 351, 380
ApeKI GCWGC 2 cut(s) 257, 305
AseI ATTAAT 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 244, 292
BceAI ACGGC 2 cut(s) 191, 338
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 3 cut(s) 7, 116, 213
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 306
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 2 cut(s) 258, 306
BlsI GCNGC 2 cut(s) 259, 307
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 69, 360
BpiI GAAGAC 1 cut(s) 121
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 354, 407
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
Bse8I GATNNNNATC 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 354, 407
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 244, 292
BshFI GGCC 2 cut(s) 353, 382
BslFI GGGAC 2 cut(s) 182, 269
BslI CCNNNNNNNGG 6 cut(s) 64, 77, 140, 292, 293, 294
BsmAI GTCTC 3 cut(s) 7, 116, 213
BsmBI CGTCTC 1 cut(s) 7
BsmFI GGGAC 2 cut(s) 182, 269
BsnI GGCC 2 cut(s) 353, 382
Bsp143I GATC 3 cut(s) 82, 217, 242
BspACI CCGC 2 cut(s) 58, 93
BspANI GGCC 2 cut(s) 353, 382
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 6, 69, 360
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 354, 407
BssMI GATC 3 cut(s) 82, 217, 242
BssT1I CCWWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 9, 332
BstDSI CCRYGG 1 cut(s) 354
BstKTI GATC 3 cut(s) 85, 220, 245
BstMAI GTCTC 3 cut(s) 7, 116, 213
BstMBI GATC 3 cut(s) 82, 217, 242
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 244, 292
BstV2I GAAGAC 1 cut(s) 121
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 353, 382
BtgI CCRYGG 1 cut(s) 354
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 5
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 1 cut(s) 299
CviJI RGCY 4 cut(s) 257, 353, 359, 382
CviKI_1 RGCY 4 cut(s) 257, 353, 359, 382
DdeI CTNAG 2 cut(s) 9, 332
DpnI GATC 3 cut(s) 84, 219, 244
DpnII GATC 3 cut(s) 82, 217, 242
DraIII CACNNNGTG 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 30, 249, 251, 300
FaqI GGGAC 2 cut(s) 182, 269
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 258, 306
Fsp4HI GCNGC 2 cut(s) 258, 306
FspBI CTAG 1 cut(s) 96
GluI GCNGC 2 cut(s) 258, 306
HaeIII GGCC 2 cut(s) 353, 382
Hin1II CATG 1 cut(s) 302
HinfI GANTC 1 cut(s) 41
HphI GGTGA 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 260, 272, 308, 323
HpyF3I CTNAG 2 cut(s) 9, 332
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 3 cut(s) 82, 217, 242
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 4 cut(s) 63, 164, 267, 282
Lsp1109I GCAGC 2 cut(s) 244, 292
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 84, 219, 244
MboI GATC 3 cut(s) 82, 217, 242
MboII GAAGA 3 cut(s) 121, 382, 424
MfeI CAATTG 1 cut(s) 233
MluCI AATT 4 cut(s) 21, 51, 182, 233
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 7 cut(s) 18, 233, 308, 332, 343, 366, 372
MseI TTAA 2 cut(s) 20, 278
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 257
MunI CAATTG 1 cut(s) 233
NdeII GATC 3 cut(s) 82, 217, 242
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 3 cut(s) 6, 69, 360
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 259, 307
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 6, 69, 360
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 20, 278
SatI GCNGC 2 cut(s) 258, 306
Sau3AI GATC 3 cut(s) 82, 217, 242
Sau96I GGNCC 1 cut(s) 5
SetI ASST 3 cut(s) 259, 278, 343
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 4 cut(s) 21, 51, 182, 233
SsiI CCGC 2 cut(s) 58, 93
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 127
TasI AATT 4 cut(s) 21, 51, 182, 233
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 20, 278
Tru9I TTAA 2 cut(s) 20, 278
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 257, 305
Tsp45I GTSAC 1 cut(s) 110
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 20
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.