Rmu_sc0000091.1_g000004

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000091.1
OG0000161
Physical Location & Seq
Forward (+)
8717 .. 9231
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000091.1_g000004.1.cds

Sequence Viewer

Length: 378 bp
atgtttcgcacttacgcgcatttggtcttcccgccgttagggggagataagaacgttaccgttcctgatgaacgacgtgaattgacgtggaatgtccccactatgtctcatcttgatccccgaaccgcacaatgtgataatgaagtgcggagaattctagatctacagagtgtagcccaaaatatgccagacgctttctctgatctagctaaagtgatgagatcatatatacctactgcaaatgtgcctgcaaggatagacgtccctgtaggatgtgtcgtcccagatggaagaggtacgaccatggcggctaaccagtcatatgtccctgcccagaagcgaggtagaccattaggttcgaaggattcttatccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

8.68

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 17
AciI CCGC 4 cut(s) 32, 126, 148, 308
AclI AACGTT 1 cut(s) 54
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 38, 41
AjiI CACGTC 2 cut(s) 77, 87
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 153
AspLEI GCGC 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 19
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 3 cut(s) 158, 206, 376
BfmI CTRYAG 2 cut(s) 164, 267
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmgBI CACGTC 2 cut(s) 77, 87
BpiI GAAGAC 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 41
Bse1I ACTGG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 278
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 38, 41
BseNI ACTGG 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 17
BslFI GGGAC 4 cut(s) 80, 248, 266, 311
BslI CCNNNNNNNGG 2 cut(s) 38, 41
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 4 cut(s) 80, 248, 266, 311
Bsp119I TTCGAA 1 cut(s) 359
Bsp143I GATC 4 cut(s) 115, 160, 202, 221
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 4 cut(s) 32, 126, 148, 308
BspFNI CGCG 1 cut(s) 17
BspPI GGATC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 359
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 4 cut(s) 115, 160, 202, 221
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 278
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 118, 163, 205, 224
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 4 cut(s) 115, 160, 202, 221
BstSFI CTRYAG 2 cut(s) 164, 267
BstUI CGCG 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtgI CCRYGG 1 cut(s) 303
BtrI CACGTC 2 cut(s) 77, 87
BtsCI GGATG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 19
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 304
CviJI RGCY 3 cut(s) 176, 209, 311
CviKI_1 RGCY 3 cut(s) 176, 209, 311
CviQI GTAC 1 cut(s) 297
DpnI GATC 4 cut(s) 117, 162, 204, 223
DpnII GATC 4 cut(s) 115, 160, 202, 221
DraIII CACNNNGTG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 307
FaiI YATR 8 cut(s) 104, 185, 226, 228, 230, 305, 322, 324
FaqI GGGAC 4 cut(s) 80, 248, 266, 311
FatI CATG 1 cut(s) 303
FauI CCCGC 1 cut(s) 39
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 3 cut(s) 158, 206, 376
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 309
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 65, 113, 158
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 4 cut(s) 54, 76, 86, 261
HpyCH4V TGCA 2 cut(s) 239, 251
HpySE526I ACGT 4 cut(s) 54, 76, 86, 261
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 4 cut(s) 115, 160, 202, 221
LpnPI CCDG 8 cut(s) 78, 201, 261, 279, 297, 329, 342, 347
MaeI CTAG 3 cut(s) 158, 206, 376
MaeII ACGT 4 cut(s) 54, 76, 86, 261
MaeIII GTNAC 1 cut(s) 55
MalI GATC 4 cut(s) 117, 162, 204, 223
MboI GATC 4 cut(s) 115, 160, 202, 221
MboII GAAGA 2 cut(s) 19, 303
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 80, 153
MnlI CCTC 2 cut(s) 287, 335
MvnI CGCG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 303
NdeI CATATG 1 cut(s) 322
NdeII GATC 4 cut(s) 115, 160, 202, 221
NlaIII CATG 1 cut(s) 307
NspV TTCGAA 1 cut(s) 359
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 310
Psp1406I AACGTT 1 cut(s) 54
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 4 cut(s) 115, 160, 202, 221
SetI ASST 9 cut(s) 57, 79, 89, 211, 235, 264, 298, 346, 358
SfcI CTRYAG 2 cut(s) 164, 267
SfuI TTCGAA 1 cut(s) 359
Sse9I AATT 2 cut(s) 80, 153
SsiI CCGC 4 cut(s) 32, 126, 148, 308
SspMI CTAG 3 cut(s) 158, 206, 376
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 4 cut(s) 57, 79, 89, 264
TaqI TCGA 1 cut(s) 359
TasI AATT 2 cut(s) 80, 153
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 84, 156
XapI RAATTY 1 cut(s) 153
XbaI TCTAGA 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 346
XspI CTAG 3 cut(s) 158, 206, 376
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.