Rmu_sc0006711.1_g000018

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006711.1
OG0000161
Physical Location & Seq
Forward (+)
63448 .. 64065
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006711.1_g000018.1.cds

Sequence Viewer

Length: 495 bp
atgcctgatacatttactgatattgcaaaagtgacgagattacatataccagctgcaaatgtgactgcaaggttagaagtccccaacaaggggcacggtgccgcagatagaggcactgcaaccacacttagtggaggtgtggttgaggtcgtggctccccaaaggaagagagggaggccacttggtttgattgacactcacccaaggaagaggagggcaaagaacaaagaaatctcaatggattatgagagtacgtatgagttgatggaaagatcttccatacacattgatgatgaatttccatacactattgctcaagaaatcatagagcacaatgatatcgaaccacgctctgttgcagaatgtcaacaaagagcagattggcctaaatggaaagaaacaatccaggcagaattagattctctgacaaagcaacaggtatttggtccggtagtgctaactccaccaagtgtaaatcctgaaggacataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

164

Amino Acids

18.39

Weight (kDa)

6.31

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 296
AdeI CACNNNGTG 2 cut(s) 131, 470
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 3 cut(s) 88, 89, 90
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 333
AoxI GGCC 2 cut(s) 176, 383
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 407
BglII AGATCT 1 cut(s) 272
BisI GCNGC 2 cut(s) 54, 102
BlsI GCNGC 2 cut(s) 55, 103
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 100, 156
BmrFI CCNGG 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseRI GAGGAG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 178, 385
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 2 cut(s) 178, 385
Bsp1286I GDGCHC 2 cut(s) 96, 333
Bsp143I GATC 1 cut(s) 272
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 178, 385
BspLI GGNNCC 2 cut(s) 100, 156
BspT107I GGYRCC 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 161, 203
BstBAI YACGTR 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 1 cut(s) 275
BstMBI GATC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 96
BstSNI TACGTA 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 2 cut(s) 178, 385
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 252
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviJI RGCY 4 cut(s) 53, 155, 178, 385
CviKI_1 RGCY 4 cut(s) 53, 155, 178, 385
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
DraIII CACNNNGTG 2 cut(s) 131, 470
Eam1104I CTCTTC 2 cut(s) 161, 203
EarI CTCTTC 2 cut(s) 161, 203
Eco105I TACGTA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaiI YATR 8 cut(s) 45, 47, 246, 258, 281, 304, 326, 489
FaqI GGGAC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 54, 102
Fsp4HI GCNGC 2 cut(s) 54, 102
GluI GCNGC 2 cut(s) 54, 102
HaeIII GGCC 2 cut(s) 178, 385
HapII CCGG 1 cut(s) 449
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HinfI GANTC 1 cut(s) 419
HpaII CCGG 1 cut(s) 449
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 2 cut(s) 317, 479
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 5 cut(s) 26, 56, 68, 119, 359
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 254
Kzo9I GATC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 18, 63, 392, 419, 422, 462
Lsp1109I GCAGC 1 cut(s) 40
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 31, 61
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 3 cut(s) 178, 220, 267
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 96, 333
MluCI AATT 2 cut(s) 296, 413
MnlI CCTC 7 cut(s) 104, 128, 139, 164, 168, 204, 207
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
NdeII GATC 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 100, 156
NmuCI GTSAC 2 cut(s) 31, 61
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 2 cut(s) 55, 103
Ppu21I YACGTR 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 100, 156
PspPI GGNCC 1 cut(s) 446
PsuI RGATCY 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 2 cut(s) 54, 102
Sau3AI GATC 1 cut(s) 272
Sau96I GGNCC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 2 cut(s) 96, 333
SetI ASST 6 cut(s) 55, 74, 139, 150, 257, 441
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
SnaBI TACGTA 1 cut(s) 255
Sse9I AATT 2 cut(s) 296, 413
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 296, 413
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 419
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 2 cut(s) 31, 61
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 31, 61
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.