Rmu_sc0004969.1_g000010

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004969.1
OG0000161
Physical Location & Seq
Reverse (-)
39367 .. 39741
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004969.1_g000010.1.cds

Sequence Viewer

Length: 375 bp
atggattatgagagtgcgtatgagttgatggaaagatcttccatacatattgatgatgtatttgcatatattgttgctcaagaaatcatagagtacaatgatatcgaaccacgctctgttgcagaatatcaacaaagagcagattggcctaaatggaaagaagtaatccaggcagaactaaattctttggcaaagagacaggtatttggttcggtagtgctaatcccaccaagtgtaaagcttgtaggacataaatgggtcttgtcagaaagtgtattgagaagaatgaagtcctcaggtacaaggctcgccttatggtgcaaagtttctcacaacgccctggaattgactacgatgacacatactctcccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

124

Amino Acids

14.32

Weight (kDa)

6.07

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 181
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 2 cut(s) 95, 301
AjnI CCWGG 2 cut(s) 168, 339
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 295
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 170, 341
BcoDI GTCTC 1 cut(s) 190
BglII AGATCT 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 170, 341
BmrFI CCNGG 2 cut(s) 170, 341
BpuEI CTTGAG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 1 cut(s) 351
Bse21I CCTNAGG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 170, 341
BseDI CCNNGG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 35
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 170, 341
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 295
BstKTI GATC 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 35
BstNI CCWGG 2 cut(s) 170, 341
BstSCI CCNGG 2 cut(s) 168, 339
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
Bsu36I CCTNAGG 1 cut(s) 295
BsuRI GGCC 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 94, 300
CviJI RGCY 3 cut(s) 148, 241, 307
CviKI_1 RGCY 3 cut(s) 148, 241, 307
CviQI GTAC 2 cut(s) 94, 300
DdeI CTNAG 1 cut(s) 295
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
DraIII CACNNNGTG 1 cut(s) 233
Eco32I GATATC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 168, 339
EcoRV GATATC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 65, 122, 321
HpyF3I CTNAG 1 cut(s) 295
Kzo9I GATC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 155, 182, 185, 282, 326, 353
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 2 cut(s) 30, 294
MflI RGATCY 1 cut(s) 35
MluCI AATT 2 cut(s) 181, 344
MnlI CCTC 1 cut(s) 304
MslI CAYNNNNRTG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 170, 341
MvaI CCWGG 2 cut(s) 170, 341
NdeII GATC 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 168, 339
PspGI CCWGG 2 cut(s) 168, 339
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 2 cut(s) 95, 301
RsaNI GTAC 2 cut(s) 94, 300
RseI CAYNNNNRTG 1 cut(s) 51
Sau3AI GATC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 170, 341
SetI ASST 3 cut(s) 204, 243, 301
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 2 cut(s) 181, 344
StyD4I CCNGG 2 cut(s) 168, 339
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 181, 344
TatI WGTACW 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 302
XapI RAATTY 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.