Rmu_co8253889.1_g000001

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8253889.1
Physical Location & Seq
Reverse (-)
2 .. 657
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8253889.1_g000001.1.cds

Sequence Viewer

Length: 510 bp
atgattatccattatttggaacccttgacaggagatctcttttccagtagatttgcggattgtcactttgatgagacaatcttcccgtcgttaaggggagataggaaaaaggattttccaagtgacgagatcacatataccagctgcaaatgtgctgcaaggttagaagtccccaacaaggggcacaatgccacatatagaggcactgcaaccacacttagtggaggtgtggttgaggcagtggctccccaaaggaagagggggaggccacttggttcaattgacactcacccaaggaagaagaggacgagtaaggcacgaactgatccattaatcatcaatgtggagaatccctctcatgagattttctttgattatagttatgtccatgaatcaatacaggaggacgctccgatgtttgaaatgattccagagaacaaagaaatctcaatggattatgagagtgtgtatgagttaatagaaagatcttccatacacattgatgatgta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.4

Weight (kDa)

5.49

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 5 cut(s) 16, 29, 178, 179, 180
AgsI TTSAA 2 cut(s) 279, 422
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 320
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 2 cut(s) 144, 155
AseI ATTAAT 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 131, 142
BcoDI GTCTC 1 cut(s) 68
BglII AGATCT 2 cut(s) 34, 485
BisI GCNGC 2 cut(s) 145, 156
BlsI GCNGC 2 cut(s) 146, 157
BmiI GGNNCC 2 cut(s) 21, 246
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BsaJI CCNNGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 29, 178, 179, 180
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 293
BseLI CCNNNNNNNGG 5 cut(s) 16, 29, 178, 179, 180
BseNI ACTGG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 2 cut(s) 131, 142
BshFI GGCC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 5 cut(s) 16, 29, 178, 179, 180
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 4 cut(s) 34, 129, 325, 485
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 268
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 21, 246
BspPI GGATC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 4 cut(s) 34, 129, 325, 485
BssT1I CCWWGG 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 251, 296
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 4 cut(s) 37, 132, 328, 488
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 4 cut(s) 34, 129, 325, 485
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 131, 142
BstX2I RGATCY 2 cut(s) 34, 485
BstYI RGATCY 2 cut(s) 34, 485
BsuRI GGCC 1 cut(s) 268
BtsI GCAGTG 2 cut(s) 204, 246
BtsIMutI CAGTG 2 cut(s) 204, 246
CciI TCATGA 1 cut(s) 358
CseI GACGC 1 cut(s) 416
CviAII CATG 2 cut(s) 359, 389
CviJI RGCY 3 cut(s) 144, 245, 268
CviKI_1 RGCY 3 cut(s) 144, 245, 268
DdeI CTNAG 1 cut(s) 218
DpnI GATC 4 cut(s) 36, 131, 327, 487
DpnII GATC 4 cut(s) 34, 129, 325, 485
DraIII CACNNNGTG 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 251, 296
EarI CTCTTC 2 cut(s) 251, 296
Eco130I CCWWGG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 2 cut(s) 362, 392
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 358, 388
Fnu4HI GCNGC 2 cut(s) 145, 156
Fsp4HI GCNGC 2 cut(s) 145, 156
GluI GCNGC 2 cut(s) 145, 156
HaeIII GGCC 1 cut(s) 268
HgaI GACGC 1 cut(s) 416
Hin1II CATG 2 cut(s) 362, 392
HinfI GANTC 3 cut(s) 349, 392, 427
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 2 cut(s) 359, 431
Hpy99I CGWCG 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 147, 158, 209
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 2 cut(s) 362, 392
Kzo9I GATC 4 cut(s) 34, 129, 325, 485
LmnI GCTCC 2 cut(s) 250, 415
LpnPI CCDG 5 cut(s) 15, 58, 154, 386, 444
Lsp1109I GCAGC 2 cut(s) 131, 142
MaeIII GTNAC 2 cut(s) 62, 122
MalI GATC 4 cut(s) 36, 131, 327, 487
MboI GATC 4 cut(s) 34, 129, 325, 485
MboII GAAGA 5 cut(s) 73, 268, 310, 313, 480
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 2 cut(s) 34, 485
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 1 cut(s) 279
MnlI CCTC 8 cut(s) 194, 218, 229, 252, 258, 297, 364, 397
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 92, 332, 476
MslI CAYNNNNRTG 3 cut(s) 69, 341, 501
MspA1I CMGCKG 1 cut(s) 144
MunI CAATTG 1 cut(s) 279
NdeII GATC 4 cut(s) 34, 129, 325, 485
NlaIII CATG 2 cut(s) 362, 392
NlaIV GGNNCC 2 cut(s) 21, 246
NmuCI GTSAC 2 cut(s) 62, 122
PagI TCATGA 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 349, 392, 427
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 2 cut(s) 146, 157
PshBI ATTAAT 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 21, 246
PsuI RGATCY 2 cut(s) 34, 485
PvuII CAGCTG 1 cut(s) 144
RseI CAYNNNNRTG 3 cut(s) 69, 341, 501
SaqAI TTAA 3 cut(s) 92, 332, 476
SatI GCNGC 2 cut(s) 145, 156
Sau3AI GATC 4 cut(s) 34, 129, 325, 485
SduI GDGCHC 1 cut(s) 186
SetI ASST 3 cut(s) 146, 164, 229
SmiMI CAYNNNNRTG 3 cut(s) 69, 341, 501
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 56
StyI CCWWGG 1 cut(s) 293
TasI AATT 1 cut(s) 279
TfiI GAWTC 3 cut(s) 349, 392, 427
Tru1I TTAA 3 cut(s) 92, 332, 476
Tru9I TTAA 3 cut(s) 92, 332, 476
TscAI CASTG 2 cut(s) 211, 246
TseFI GTSAC 2 cut(s) 62, 122
TseI GCWGC 2 cut(s) 144, 155
Tsp45I GTSAC 2 cut(s) 62, 122
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 2 cut(s) 211, 246
Van91I CCANNNNNTGG 1 cut(s) 16
VspI ATTAAT 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.