Rmu_sc0003385.1_g000020

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003385.1
OG0000161
Physical Location & Seq
Reverse (-)
76972 .. 77679
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003385.1_g000020.1.cds

Sequence Viewer

Length: 498 bp
atggatgcttcgacacactggttacatgttgttttattgtccacaagaaatgctgcaaaactcctagcacagattatacgtttaagggctcaccaccctgatcaccctatcaagtctataaggcttgataacactggagaacccactactagccaaccattttttgtgtaccagttggtaactggatatgagcctgatatttcacacttacgcatatttggttgcgcagtatatgtgcctattgtgctcccacagcgcaccaaaatgggtcctcagagacgattaagtatttatgttggatacgaatccccaacaattatcagctacttggaacccttgacagacgatctctttatcgctagatttgcggattgtcactttgatgagacagtcttcccgtcattagggggagataggaaaaaggattttccaaaggaacgacaggaattgtcgtggtttgtccccactctgtctcattttgatccccgcacttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

165

Amino Acids

18.96

Weight (kDa)

7.1

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 226
AciI CCGC 2 cut(s) 368, 487
AclWI GGATC 1 cut(s) 476
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 25
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 3 cut(s) 271, 380, 477
AlwI GGATC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 227, 258
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 83, 95
AvaII GGWCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 40
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 3 cut(s) 271, 380, 477
BfaI CTAG 3 cut(s) 65, 150, 360
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 270, 333
BpiI GAAGAC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 4 cut(s) 23, 139, 172, 187
Bse8I GATNNNNATC 1 cut(s) 304
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 4 cut(s) 23, 139, 172, 187
BseXI GCAGC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 3 cut(s) 271, 380, 477
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 91, 249
Bsp143I GATC 3 cut(s) 100, 346, 481
BspACI CCGC 2 cut(s) 368, 487
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 270, 333
BspPI GGATC 1 cut(s) 476
BsrI ACTGG 4 cut(s) 23, 139, 172, 187
BssMI GATC 3 cut(s) 100, 346, 481
Bst4CI ACNGT 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 2 cut(s) 227, 258
BstKTI GATC 3 cut(s) 103, 349, 484
BstMAI GTCTC 3 cut(s) 271, 380, 477
BstMBI GATC 3 cut(s) 100, 346, 481
BstMWI GCNNNNNNNGC 3 cut(s) 244, 253, 365
BstNSI RCATGY 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 385
BsuI GTATCC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 16, 132
CfoI GCGC 2 cut(s) 227, 258
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 26
CviJI RGCY 5 cut(s) 89, 124, 153, 193, 324
CviKI_1 RGCY 5 cut(s) 89, 124, 153, 193, 324
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 102, 348, 483
DpnII GATC 3 cut(s) 100, 346, 481
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 1 cut(s) 29
FaiI YATR 9 cut(s) 27, 77, 119, 189, 215, 232, 234, 294, 496
FaqI GGGAC 1 cut(s) 446
FatI CATG 1 cut(s) 25
FauI CCCGC 1 cut(s) 494
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 3 cut(s) 65, 150, 360
FspI TGCGCA 1 cut(s) 226
GlaI GCGC 2 cut(s) 226, 257
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 156
HhaI GCGC 2 cut(s) 227, 258
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 2 cut(s) 225, 256
HinP1I GCGC 2 cut(s) 225, 256
HinfI GANTC 1 cut(s) 305
HphI GGTGA 2 cut(s) 83, 95
Hpy166II GTNNAC 2 cut(s) 42, 169
Hpy188I TCNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 42, 169
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 253, 365
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 2 cut(s) 225, 256
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 346, 481
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 7 cut(s) 4, 111, 120, 168, 185, 207, 428
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 3 cut(s) 65, 150, 360
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 3 cut(s) 21, 178, 374
MalI GATC 3 cut(s) 102, 348, 483
MboI GATC 3 cut(s) 100, 346, 481
MboII GAAGA 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 91, 249
MluCI AATT 2 cut(s) 315, 446
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 1 cut(s) 282
MseI TTAA 2 cut(s) 83, 284
MslI CAYNNNNRTG 2 cut(s) 263, 381
MwoI GCNNNNNNNGC 3 cut(s) 244, 253, 365
NdeII GATC 3 cut(s) 100, 346, 481
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 2 cut(s) 270, 333
NmuCI GTSAC 1 cut(s) 374
NsbI TGCGCA 1 cut(s) 226
NspI RCATGY 1 cut(s) 29
PciI ACATGT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 269
PscI ACATGT 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 270, 333
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 263, 381
SaqAI TTAA 2 cut(s) 83, 284
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 3 cut(s) 100, 346, 481
Sau96I GGNCC 1 cut(s) 269
SduI GDGCHC 2 cut(s) 91, 249
SetI ASST 2 cut(s) 82, 326
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 263, 381
Sse9I AATT 2 cut(s) 315, 446
SsiI CCGC 2 cut(s) 368, 487
SspMI CTAG 3 cut(s) 65, 150, 360
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 11
TasI AATT 2 cut(s) 315, 446
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 2 cut(s) 83, 284
Tru9I TTAA 2 cut(s) 83, 284
TscAI CASTG 2 cut(s) 23, 139
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 483
TspRI CASTG 2 cut(s) 23, 139
VpaK11BI GGWCC 1 cut(s) 269
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XspI CTAG 3 cut(s) 65, 150, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.