Rmu_sc0013071.1_g000003

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013071.1
Physical Location & Seq
Reverse (-)
8781 .. 9351
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013071.1_g000003.1.cds

Sequence Viewer

Length: 444 bp
atgtctgatgcgtttactgatatagcaaaagtgatgaaattacatatatcagctgcaaatatgcctgcaagattagaagtccccaacaaggggcacggtgccaaagatagaggcactgcaactacacttagtggaagtgtggacgctccgatgtttgaaatgattctagagaacaaagaaatctcaatggattatgagagtgcgtatgagttgatagaaagatcttccatacacattgatgatgaattttcatacactgttgctcaagaaatcatagagcacgatgatatcgaaccaggctctgttgcagaatgtcaacaaagagcagatcggcctaaacggaaagaagcaatccaggcaaaattagattatctgacaaagagacaggtatttggtcaggtagtgctaaccccaccaagtgtaaagcctgtaggacataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

16.37

Weight (kDa)

5.35

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 245
AdeI CACNNNGTG 2 cut(s) 131, 419
AfiI CCNNNNNNNGG 3 cut(s) 88, 89, 90
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 2 cut(s) 295, 354
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 376
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 297, 356
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 429
BglII AGATCT 1 cut(s) 221
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 297, 356
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 297, 356
BpuEI CTTGAG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseBI CCWGG 2 cut(s) 297, 356
BseLI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 282
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 88, 89, 90
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 96, 282
Bsp143I GATC 2 cut(s) 221, 328
BspANI GGCC 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 98
BssMI GATC 2 cut(s) 221, 328
Bst2UI CCWGG 2 cut(s) 297, 356
Bst4CI ACNGT 2 cut(s) 98, 259
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 2 cut(s) 224, 331
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 2 cut(s) 221, 328
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 2 cut(s) 297, 356
BstSCI CCNGG 2 cut(s) 295, 354
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 255
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 302
CseI GACGC 1 cut(s) 152
CviJI RGCY 4 cut(s) 53, 300, 334, 427
CviKI_1 RGCY 4 cut(s) 53, 300, 334, 427
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 223, 330
DpnII GATC 2 cut(s) 221, 328
DraIII CACNNNGTG 2 cut(s) 131, 419
Eco32I GATATC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 295, 354
EcoRV GATATC 1 cut(s) 289
FaqI GGGAC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 334
HgaI GACGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 317
HindII GTYRAC 1 cut(s) 317
HinfI GANTC 1 cut(s) 163
Hpy166II GTNNAC 3 cut(s) 15, 142, 317
Hpy188I TCNGA 3 cut(s) 7, 150, 375
Hpy188III TCNNGA 2 cut(s) 167, 266
Hpy8I GTNNAC 3 cut(s) 15, 142, 317
HpyCH4III ACNGT 2 cut(s) 98, 259
HpyCH4V TGCA 4 cut(s) 56, 68, 119, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 221, 328
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 78, 282, 309, 341, 368, 371, 383
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 167
MalI GATC 2 cut(s) 223, 330
MboI GATC 2 cut(s) 221, 328
MboII GAAGA 1 cut(s) 216
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 96, 282
MluCI AATT 3 cut(s) 38, 245, 362
MnlI CCTC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 297, 356
MvaI CCWGG 2 cut(s) 297, 356
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 2 cut(s) 221, 328
NlaIV GGNNCC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 295, 354
PspGI CCWGG 2 cut(s) 295, 354
PspN4I GGNNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 221, 328
ScrFI CCNGG 2 cut(s) 297, 356
SduI GDGCHC 2 cut(s) 96, 282
SetI ASST 3 cut(s) 55, 390, 402
SfcI CTRYAG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 3 cut(s) 38, 245, 362
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 295, 354
TaaI ACNGT 2 cut(s) 98, 259
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 38, 245, 362
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 2 cut(s) 121, 262
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 50, 240, 258
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 2 cut(s) 121, 262
XapI RAATTY 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.