Rmu_sc0000898.1_g000061

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000898.1
OG0000161
Physical Location & Seq
Forward (+)
276299 .. 276640
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000898.1_g000061.1.cds

Sequence Viewer

Length: 342 bp
atgtctcatcttgatccccgaaccgcacaatgtgataatgaagtgcggagaattctagacctacagagtgtagcccaaaatatgccagacgctttctctgatctagctaaagtgataagatcatatatacctgctgcaaatgtgcctgcaaggatagacgtccctgtaggatgtgtcgtcccagatggacgagatacgaccatggcggctaaccagtcacatgtccctgcccagaagcgaggtagaccactaggttcgaaggatttttatccccggaagagggtaaaactggcaccaacgaatccactagacatcgcaatctcaaaccgattcatctcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

113

Amino Acids

12.45

Weight (kDa)

9.69

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 244
AciI CCGC 3 cut(s) 24, 46, 206
AclWI GGATC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 279, 280
AflIII ACRYGT 1 cut(s) 220
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 274
AsuII TTCGAA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 4 cut(s) 56, 104, 251, 308
BfmI CTRYAG 2 cut(s) 62, 165
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 2 cut(s) 135, 207
BlsI GCNGC 2 cut(s) 136, 208
Bme1390I CCNGG 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 201, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 280
Bse1I ACTGG 2 cut(s) 214, 294
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 201, 272
BseGI GGATG 1 cut(s) 176
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 279, 280
BseNI ACTGG 2 cut(s) 214, 294
BseXI GCAGC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 3 cut(s) 146, 164, 209
BslI CCNNNNNNNGG 2 cut(s) 279, 280
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 3 cut(s) 146, 164, 209
Bsp119I TTCGAA 1 cut(s) 257
Bsp143I GATC 3 cut(s) 13, 100, 119
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 3 cut(s) 24, 46, 206
BspHI TCATGA 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 292
BsrI ACTGG 2 cut(s) 214, 294
BssECI CCNNGG 2 cut(s) 201, 272
BssMI GATC 3 cut(s) 13, 100, 119
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 3 cut(s) 16, 103, 122
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 13, 100, 119
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 2 cut(s) 62, 165
BstV1I GCAGC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 298
BtsCI GGATG 1 cut(s) 176
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 338
CseI GACGC 1 cut(s) 98
CviAII CATG 3 cut(s) 202, 221, 339
CviJI RGCY 3 cut(s) 74, 107, 209
CviKI_1 RGCY 3 cut(s) 74, 107, 209
DpnI GATC 3 cut(s) 15, 102, 121
DpnII GATC 3 cut(s) 13, 100, 119
DraIII CACNNNGTG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 3 cut(s) 205, 224, 342
FaiI YATR 7 cut(s) 83, 124, 126, 128, 203, 222, 340
FaqI GGGAC 3 cut(s) 146, 164, 209
FatI CATG 3 cut(s) 201, 220, 338
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 135, 207
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 135, 207
FspBI CTAG 4 cut(s) 56, 104, 251, 308
GluI GCNGC 2 cut(s) 135, 207
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 3 cut(s) 205, 224, 342
HinfI GANTC 2 cut(s) 301, 330
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 3 cut(s) 11, 56, 339
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 137, 149
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 3 cut(s) 205, 224, 342
Kzo9I GATC 3 cut(s) 13, 100, 119
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 4 cut(s) 56, 104, 251, 308
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 216
MalI GATC 3 cut(s) 15, 102, 121
MboI GATC 3 cut(s) 13, 100, 119
MboII GAAGA 1 cut(s) 289
MluCI AATT 1 cut(s) 51
MnlI CCTC 2 cut(s) 233, 273
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 274
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 1 cut(s) 201
NdeII GATC 3 cut(s) 13, 100, 119
NlaIII CATG 3 cut(s) 205, 224, 342
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 216
NspI RCATGY 1 cut(s) 224
NspV TTCGAA 1 cut(s) 257
PagI TCATGA 1 cut(s) 338
PciI ACATGT 1 cut(s) 220
PfeI GAWTC 2 cut(s) 301, 330
PkrI GCNGC 2 cut(s) 136, 208
PscI ACATGT 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 294
SatI GCNGC 2 cut(s) 135, 207
Sau3AI GATC 3 cut(s) 13, 100, 119
ScrFI CCNGG 1 cut(s) 274
SetI ASST 6 cut(s) 63, 109, 133, 162, 244, 256
SfcI CTRYAG 2 cut(s) 62, 165
SfuI TTCGAA 1 cut(s) 257
Sse9I AATT 1 cut(s) 51
SsiI CCGC 3 cut(s) 24, 46, 206
SspMI CTAG 4 cut(s) 56, 104, 251, 308
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 51
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 2 cut(s) 301, 330
TseFI GTSAC 1 cut(s) 216
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 54, 322
XapI RAATTY 1 cut(s) 51
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 244
XspI CTAG 4 cut(s) 56, 104, 251, 308
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.