Rmu_sc0001552.1_g000033

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001552.1
OG0000161
Physical Location & Seq
Forward (+)
86847 .. 87602
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001552.1_g000033.1.cds

Sequence Viewer

Length: 756 bp
atgctcctatcagaatctctaacaattatccgctatttggaacctttgacaggcgatctctttaccgctagatttacggattgtcactttaatgagacagtcttcccgtcgttagggggagataggaaaaatgattctccaagggaacgacagaaattgtcctggtttgtccccactctgtctcattttgatccctgcacttcacaatgtaaaagtgaagtgaaaagaataatcgatcatcaaaacgtagtagatttgatgcctgatgcgtttactgatatcgcaaaagtgaggagatcacatataccagctgcaaatgtgcctgcaagattagaagtcccaaacaaggggcatggcgccatagatagaggtgctacaaccacacttagtggaggtatgattgaggtcgtggctccccaatggatcgtttggttcactcacccaagaaagaagagggtgagtaaggcacaaaccgatccattaatcatcaatgtagagaatccttctcatgagattgtctctgattatagttttgtccatgaatcaatactagaggactctctgatgtttgaaatgattctagagaacaaagaaatctcaatggattatgagagtgtgtatgagttgatggaaatatctttcatacacattgatgatatatttgcatacactgttgctcaagaaatcatagagcacgatgatatcaaaccatgcatgctctgttgcagaatgtcaacaaagagcagattagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

251

Amino Acids

28.67

Weight (kDa)

5.36

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 2 cut(s) 31, 66
AclWI GGATC 3 cut(s) 185, 431, 470
AcyI GRCGYC 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 389
AfiI CCNNNNNNNGG 5 cut(s) 37, 50, 113, 346, 347
AgsI TTSAA 1 cut(s) 572
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 3 cut(s) 89, 186, 523
AlwI GGATC 3 cut(s) 185, 431, 470
ApeKI GCWGC 1 cut(s) 311
AseI ATTAAT 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 431, 469
BanI GGYRCC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 622
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 89, 186, 523
BfaI CTAG 3 cut(s) 69, 551, 581
BfoI RGCGCY 1 cut(s) 360
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 42, 358, 414
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 2 cut(s) 249, 256
BpiI GAAGAC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpuEI CTTGAG 1 cut(s) 663
Bsa29I ATCGAT 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 50, 113, 346, 347
BseBI CCWGG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 5 cut(s) 37, 50, 113, 346, 347
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 696
BslFI GGGAC 2 cut(s) 155, 323
BslI CCNNNNNNNGG 5 cut(s) 37, 50, 113, 346, 347
BsmAI GTCTC 3 cut(s) 89, 186, 523
BsmFI GGGAC 2 cut(s) 155, 323
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 6 cut(s) 55, 190, 235, 296, 423, 475
BspACI CCGC 2 cut(s) 31, 66
BspDI ATCGAT 1 cut(s) 234
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 3 cut(s) 42, 358, 414
BspPI GGATC 3 cut(s) 185, 431, 470
BspT107I GGYRCC 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 6 cut(s) 55, 190, 235, 296, 423, 475
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 100, 673
Bst6I CTCTTC 1 cut(s) 446
BstACI GRCGYC 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 324, 716
BstDEI CTNAG 1 cut(s) 386
BstENI CCTNNNNNAGG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 6 cut(s) 58, 193, 238, 299, 426, 478
BstMAI GTCTC 3 cut(s) 89, 186, 523
BstMBI GATC 6 cut(s) 55, 190, 235, 296, 423, 475
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 2 cut(s) 324, 716
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 359
ClaI ATCGAT 1 cut(s) 234
CviAII CATG 5 cut(s) 353, 509, 539, 711, 715
CviJI RGCY 3 cut(s) 311, 413, 752
CviKI_1 RGCY 3 cut(s) 311, 413, 752
DdeI CTNAG 1 cut(s) 386
DinI GGCGCC 1 cut(s) 358
DpnI GATC 6 cut(s) 57, 192, 237, 298, 425, 477
DpnII GATC 6 cut(s) 55, 190, 235, 296, 423, 475
DraIII CACNNNGTG 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 140
Eco32I GATATC 2 cut(s) 280, 703
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 161
EcoRV GATATC 2 cut(s) 280, 703
EcoT14I CCWWGG 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 716
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 5 cut(s) 356, 512, 542, 714, 718
FaqI GGGAC 2 cut(s) 155, 323
FatI CATG 5 cut(s) 352, 508, 538, 710, 714
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 3 cut(s) 69, 551, 581
GlaI GCGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 360
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 5 cut(s) 356, 512, 542, 714, 718
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 6 cut(s) 14, 134, 499, 542, 557, 577
HphI GGTGA 2 cut(s) 431, 469
Hpy166II GTNNAC 3 cut(s) 273, 435, 735
Hpy188I TCNGA 3 cut(s) 13, 523, 564
Hpy188III TCNNGA 3 cut(s) 509, 581, 680
Hpy8I GTNNAC 3 cut(s) 273, 435, 735
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 100, 673
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 6 cut(s) 198, 314, 326, 665, 714, 726
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 5 cut(s) 356, 512, 542, 714, 718
HspAI GCGC 1 cut(s) 357
KasI GGCGCC 1 cut(s) 356
Kzo9I GATC 6 cut(s) 55, 190, 235, 296, 423, 475
LmnI GCTCC 2 cut(s) 9, 418
LpnPI CCDG 7 cut(s) 36, 148, 175, 208, 276, 321, 336
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 249, 256
MaeI CTAG 3 cut(s) 69, 551, 581
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 83
MalI GATC 6 cut(s) 57, 192, 237, 298, 425, 477
MboI GATC 6 cut(s) 55, 190, 235, 296, 423, 475
MboII GAAGA 2 cut(s) 94, 463
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 2 cut(s) 24, 155
Mly113I GGCGCC 1 cut(s) 357
MlyI GAGTC 1 cut(s) 551
MnlI CCTC 6 cut(s) 285, 362, 386, 397, 447, 547
Mph1103I ATGCAT 1 cut(s) 716
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 2 cut(s) 90, 482
MslI CAYNNNNRTG 2 cut(s) 90, 651
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
NarI GGCGCC 1 cut(s) 357
NdeII GATC 6 cut(s) 55, 190, 235, 296, 423, 475
NlaIII CATG 5 cut(s) 356, 512, 542, 714, 718
NlaIV GGNNCC 3 cut(s) 42, 358, 414
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 716
NspI RCATGY 1 cut(s) 718
PaeI GCATGC 1 cut(s) 718
PagI TCATGA 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 5 cut(s) 14, 134, 499, 542, 577
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 551
PluTI GGCGCC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 551
PshBI ATTAAT 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 3 cut(s) 42, 358, 414
PvuII CAGCTG 1 cut(s) 311
RseI CAYNNNNRTG 2 cut(s) 90, 651
SaqAI TTAA 2 cut(s) 90, 482
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 6 cut(s) 55, 190, 235, 296, 423, 475
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 696
SetI ASST 6 cut(s) 46, 249, 313, 373, 397, 408
SfaNI GCATC 2 cut(s) 249, 256
SfoI GGCGCC 1 cut(s) 358
SmiMI CAYNNNNRTG 2 cut(s) 90, 651
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SphI GCATGC 1 cut(s) 718
Sse9I AATT 2 cut(s) 24, 155
SsiI CCGC 2 cut(s) 31, 66
SspDI GGCGCC 1 cut(s) 356
SspMI CTAG 3 cut(s) 69, 551, 581
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 100, 673
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 24, 155
TfiI GAWTC 5 cut(s) 14, 134, 499, 542, 577
Tru1I TTAA 2 cut(s) 90, 482
Tru9I TTAA 2 cut(s) 90, 482
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 555, 631
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 676
VspI ATTAAT 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 48
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 3 cut(s) 69, 551, 581
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.