Rmu_sc0028541.1_g000001

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028541.1
Physical Location & Seq
Reverse (-)
984 .. 1605
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028541.1_g000001.1.cds

Sequence Viewer

Length: 507 bp
ctgtctcattttgattcccgcacttcacaaagtgaaagtgaagtgaaaagaataatcgatcttcagaacgtagcagattcgattcttgatgcatttactgatatcgtaaaagtgacgagatcacatataccagctacaaatgtgcctgcaaggttagaagtccccagcaaggggcaccgtgctgcagatagaggcactacaaccacacttagtggaggcatggttgaggccgtggctccccaaaggaagagggggaggccaattggtttgattgacactcacccaaggaagaagaggtcgaagaacaaagaaatctcagaggattatgagagtacgtatgagttgatagaaagatctatcatatacattgatgatatatataatgctgctcaaggaatcataaagcacgatgatatcaaaccacggtctgttgcaaaatgtcaacgaagagcagattggcctaaatggaatgaaacaatcctggcagaattagggcttgtccggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

18.96

Weight (kDa)

9.24

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AciI CCGC 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 2 cut(s) 32, 212
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 169, 170, 171
AjnI CCWGG 1 cut(s) 480
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 3 cut(s) 228, 257, 458
ApeKI GCWGC 2 cut(s) 182, 386
AsuHPI GGTGA 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 169, 373
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 183
BglII AGATCT 1 cut(s) 353
BisI GCNGC 2 cut(s) 183, 387
BlsI GCNGC 2 cut(s) 184, 388
Bme1390I CCNGG 1 cut(s) 482
BmiI GGNNCC 2 cut(s) 176, 237
BmrFI CCNGG 1 cut(s) 482
BmsI GCATC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 231, 284, 422
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 170, 171
BseBI CCWGG 1 cut(s) 482
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 231, 284, 422
BseLI CCNNNNNNNGG 3 cut(s) 169, 170, 171
BseMII CTCAG 1 cut(s) 330
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 2 cut(s) 169, 373
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 3 cut(s) 230, 259, 460
BshNI GGYRCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 57
BsiSI CCGG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 3 cut(s) 169, 170, 171
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 3 cut(s) 230, 259, 460
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 58, 119, 353
BspACI CCGC 1 cut(s) 19
BspANI GGCC 3 cut(s) 230, 259, 460
BspCNI CTCAG 1 cut(s) 329
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 176, 237
BspMAI CTGCAG 1 cut(s) 187
BspQI GCTCTTC 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 231, 284, 422
BssMI GATC 3 cut(s) 58, 119, 353
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 2 cut(s) 179, 426
Bst6I CTCTTC 3 cut(s) 242, 287, 442
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 209, 316
BstDSI CCRYGG 2 cut(s) 231, 422
BstKTI GATC 3 cut(s) 61, 122, 356
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 58, 119, 353
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 480
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 177
BstSNI TACGTA 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 169, 373
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 3 cut(s) 230, 259, 460
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 2 cut(s) 231, 422
Cac8I GCNNGC 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 1 cut(s) 333
CviAII CATG 1 cut(s) 220
CviJI RGCY 6 cut(s) 134, 230, 236, 259, 460, 496
CviKI_1 RGCY 6 cut(s) 134, 230, 236, 259, 460, 496
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 209, 316
DpnI GATC 3 cut(s) 60, 121, 355
DpnII GATC 3 cut(s) 58, 119, 353
DraIII CACNNNGTG 2 cut(s) 32, 212
Eam1104I CTCTTC 3 cut(s) 242, 287, 442
EarI CTCTTC 3 cut(s) 242, 287, 442
Eco105I TACGTA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 284
Eco32I GATATC 2 cut(s) 103, 415
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 480
EcoRV GATATC 2 cut(s) 103, 415
EcoT14I CCWWGG 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 1 cut(s) 223
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 2 cut(s) 183, 387
Fsp4HI GCNGC 2 cut(s) 183, 387
GluI GCNGC 2 cut(s) 183, 387
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 3 cut(s) 230, 259, 460
HapII CCGG 1 cut(s) 502
Hin1II CATG 1 cut(s) 223
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HinfI GANTC 4 cut(s) 14, 77, 82, 396
HpaII CCGG 1 cut(s) 502
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 2 cut(s) 66, 319
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 443
HpyCH4III ACNGT 2 cut(s) 179, 426
HpyCH4IV ACGT 2 cut(s) 69, 335
HpyCH4V TGCA 4 cut(s) 92, 149, 185, 434
HpyF3I CTNAG 2 cut(s) 209, 316
HpySE526I ACGT 2 cut(s) 69, 335
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 3 cut(s) 58, 119, 353
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 5 cut(s) 144, 159, 178, 467, 494
Lsp1109I GCAGC 2 cut(s) 169, 373
LweI GCATC 1 cut(s) 79
MaeII ACGT 2 cut(s) 69, 335
MaeIII GTNAC 1 cut(s) 112
MalI GATC 3 cut(s) 60, 121, 355
MboI GATC 3 cut(s) 58, 119, 353
MboII GAAGA 6 cut(s) 53, 259, 301, 304, 313, 459
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 261, 488
MnlI CCTC 7 cut(s) 185, 209, 220, 243, 249, 288, 313
Mph1103I ATGCAT 1 cut(s) 94
MspI CCGG 1 cut(s) 502
MspR9I CCNGG 1 cut(s) 482
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 482
NdeII GATC 3 cut(s) 58, 119, 353
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 176, 237
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 442
PfeI GAWTC 4 cut(s) 14, 77, 82, 396
PkrI GCNGC 2 cut(s) 184, 388
Ppu21I YACGTR 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 2 cut(s) 176, 237
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 442
SatI GCNGC 2 cut(s) 183, 387
Sau3AI GATC 3 cut(s) 58, 119, 353
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 72, 136, 155, 299, 338
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
SnaBI TACGTA 1 cut(s) 336
Sse9I AATT 2 cut(s) 261, 488
SsiI CCGC 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 179, 426
TaiI ACGT 2 cut(s) 72, 338
TaqI TCGA 3 cut(s) 57, 80, 299
TasI AATT 2 cut(s) 261, 488
TfiI GAWTC 4 cut(s) 14, 77, 82, 396
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 182, 386
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.