Rmu_sc0014478.1_g000019

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014478.1
OG0000161
Physical Location & Seq
Forward (+)
56117 .. 57566
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014478.1_g000019.1.cds

Sequence Viewer

Length: 657 bp
atgttgagttttaaagatatacgcttgaatgggtaccacatagaaaccacaaatgagaacaatgtggaatatctttgcattacttacaatacttacagccaaagacatatattggaaagattggttgccctatcatctggtttgtattatacaaccattaaatcaattgagacataccatgtcctgaaccagaagttcactgatcaatatacatttatgttttggcatgaccgtttgggtcaccccggatctaccatgatgcattgtcactttgatgagacattattcccgttgttagggggagaaacgactgttcctgaagaatgtcgtgaattatcgtgggatgtacccactatgtctcattttgatcctcgcaccatacaaagtgaaaatgaagtgcgaatgatcctctatcttcaagatgttgctaatacaatgcctgatgcatttactgatacagcaaaagtgataagatcacacatcccagcggctaatgcacttgtgaggattgctgtcccaattggacaaaatagtgtggcggccaatgagccatctgttgcacgcttgaagggtggcagacctgtaggttcaaaagattcagttcctagaaaaaggagatcaaaggcacatctgaaacgttgttgggcaaaacgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

218

Amino Acids

25.03

Weight (kDa)

8.65

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 2 cut(s) 488, 539
AclI AACGTT 2 cut(s) 637, 652
AclWI GGATC 3 cut(s) 256, 362, 400
AcoI YGGCCR 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 2 cut(s) 35, 348
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 28, 419, 568, 591
Alw26I GTCTC 3 cut(s) 164, 272, 363
AlwI GGATC 3 cut(s) 256, 362, 400
AoxI GGCC 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 33
BccI CCATC 1 cut(s) 559
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 3 cut(s) 164, 272, 363
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 1 cut(s) 582
BisI GCNGC 2 cut(s) 489, 540
BlsI GCNGC 2 cut(s) 490, 541
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 249, 433
BpuMI CCSGG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 349, 480
BseLI CCNNNNNNNGG 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 484
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 3 cut(s) 164, 272, 363
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 1 cut(s) 542
Bsp143I GATC 6 cut(s) 202, 248, 367, 405, 473, 617
BspACI CCGC 2 cut(s) 488, 539
BspANI GGCC 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 3 cut(s) 256, 362, 400
BspT107I GGYRCC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 6 cut(s) 202, 248, 367, 405, 473, 617
Bst4CI ACNGT 2 cut(s) 233, 313
BstC8I GCNNGC 1 cut(s) 562
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 2 cut(s) 349, 480
BstKTI GATC 6 cut(s) 205, 251, 370, 408, 476, 620
BstMAI GTCTC 3 cut(s) 164, 272, 363
BstMBI GATC 6 cut(s) 202, 248, 367, 405, 473, 617
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 542
BtsCI GGATG 2 cut(s) 349, 480
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 34, 347
CviAII CATG 3 cut(s) 179, 227, 256
CviJI RGCY 4 cut(s) 99, 491, 542, 550
CviKI_1 RGCY 4 cut(s) 99, 491, 542, 550
CviQI GTAC 2 cut(s) 34, 347
DpnI GATC 6 cut(s) 204, 250, 369, 407, 475, 619
DpnII GATC 6 cut(s) 202, 248, 367, 405, 473, 617
DraI TTTAAA 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoT22I ATGCAT 2 cut(s) 264, 448
FaeI CATG 3 cut(s) 182, 230, 259
FaqI GGGAC 1 cut(s) 500
FatI CATG 3 cut(s) 178, 226, 255
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 489, 540
FokI GGATG 2 cut(s) 356, 467
Fsp4HI GCNGC 2 cut(s) 489, 540
FspBI CTAG 1 cut(s) 606
GluI GCNGC 2 cut(s) 489, 540
GsaI CCCAGC 1 cut(s) 488
HaeIII GGCC 1 cut(s) 542
HapII CCGG 1 cut(s) 246
Hin1II CATG 3 cut(s) 182, 230, 259
HinfI GANTC 1 cut(s) 596
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 633
Hpy188III TCNNGA 4 cut(s) 184, 317, 329, 419
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 233, 313
HpyCH4IV ACGT 2 cut(s) 637, 652
HpyCH4V TGCA 5 cut(s) 78, 262, 446, 497, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpySE526I ACGT 2 cut(s) 637, 652
Hsp92II CATG 3 cut(s) 182, 230, 259
KpnI GGTACC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 6 cut(s) 202, 248, 367, 405, 473, 617
LpnPI CCDG 8 cut(s) 123, 197, 203, 259, 330, 453, 498, 594
LweI GCATC 2 cut(s) 249, 433
MaeI CTAG 1 cut(s) 606
MaeII ACGT 2 cut(s) 637, 652
MaeIII GTNAC 2 cut(s) 239, 266
MalI GATC 6 cut(s) 204, 250, 369, 407, 475, 619
MboI GATC 6 cut(s) 202, 248, 367, 405, 473, 617
MboII GAAGA 2 cut(s) 332, 407
MfeI CAATTG 2 cut(s) 165, 519
MflI RGATCY 1 cut(s) 248
MluCI AATT 3 cut(s) 165, 332, 519
MnlI CCTC 3 cut(s) 381, 419, 498
Mph1103I ATGCAT 2 cut(s) 264, 448
MseI TTAA 2 cut(s) 12, 159
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 2 cut(s) 165, 519
MwoI GCNNNNNNNGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 246
NdeII GATC 6 cut(s) 202, 248, 367, 405, 473, 617
NlaIII CATG 3 cut(s) 182, 230, 259
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 2 cut(s) 239, 266
NsiI ATGCAT 2 cut(s) 264, 448
PfeI GAWTC 1 cut(s) 596
PkrI GCNGC 2 cut(s) 490, 541
Psp1406I AACGTT 2 cut(s) 637, 652
PspEI GGTNACC 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 2 cut(s) 35, 348
RsaNI GTAC 2 cut(s) 34, 347
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 12, 159
SatI GCNGC 2 cut(s) 489, 540
Sau3AI GATC 6 cut(s) 202, 248, 367, 405, 473, 617
ScrFI CCNGG 1 cut(s) 246
SetI ASST 4 cut(s) 583, 589, 640, 655
SfaNI GCATC 2 cut(s) 249, 433
SfcI CTRYAG 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 3 cut(s) 165, 332, 519
SsiI CCGC 2 cut(s) 488, 539
SspMI CTAG 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 233, 313
TaiI ACGT 2 cut(s) 640, 655
TasI AATT 3 cut(s) 165, 332, 519
TauI GCSGC 2 cut(s) 491, 542
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 2 cut(s) 12, 159
Tru9I TTAA 2 cut(s) 12, 159
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 239, 266
Tsp45I GTSAC 2 cut(s) 239, 266
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 1 cut(s) 205
XspI CTAG 1 cut(s) 606
Zsp2I ATGCAT 2 cut(s) 264, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.