Rmu_sc0003605.1_g000029

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003605.1
OG0000161
Physical Location & Seq
Forward (+)
126604 .. 128007
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003605.1_g000029.1.cds

Sequence Viewer

Length: 696 bp
atgtgtcaatctagtggactttatgtcactaccattcgacctattgaatccaataacgtaataagagaagatctcttggatttcgacacattttggctttggcatgaccgactaggacatcttggtagtgacatgatgatccgtatactaaaaacttcacacggacatccattcattcaagcgaaaagaagcaagaatcaaagactgattcccggacttagtgtgaccgccgctgccgccgtccactgcaggcctagggccacccatgtcccccttgacaacgccaaaaatggcgtcacccatggaaatggcaccatggatgccacttcccatggtcccaacgccatgatgggtgatgtagtcaccaattttgcttctaatagcactttagacgctcaggcccaaccaaaatcctcattggctgcttctacgcgtactcagataggtccacaaagacgaataggcatctatgttggatatgaatctccaactatcgtccgctaccttgaacctttgacaggcgatctcttttccgctaaatttgcggattgtcactttgatgagatagtcttcccgtcgttagaaagagataagaacacaaattctgaacttcaagtgcgacgaattatcgagctccagaacgtagcagacactctgcctgatgccttttatgatattgctaaagtgatgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

231

Amino Acids

25.66

Weight (kDa)

7.13

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 145
AccII CGCG 1 cut(s) 433
AciI CCGC 6 cut(s) 228, 231, 237, 499, 534, 545
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 2 cut(s) 539, 601
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 4 cut(s) 47, 179, 509, 614
AhdI GACNNNNNGTC 1 cut(s) 23
AluBI AGCT 1 cut(s) 634
AluI AGCT 1 cut(s) 634
Alw21I GWGCWC 1 cut(s) 636
AlwI GGATC 1 cut(s) 133
AoxI GGCC 3 cut(s) 251, 258, 399
ApeKI GCWGC 2 cut(s) 233, 422
ApoI RAATTY 2 cut(s) 539, 601
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AspA2I CCTAGG 1 cut(s) 254
AspS9I GGNCC 4 cut(s) 258, 335, 400, 446
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 3 cut(s) 289, 355, 365
AvaII GGWCC 2 cut(s) 335, 446
AvrII CCTAGG 1 cut(s) 254
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 220, 409
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 3 cut(s) 12, 113, 255
BfmI CTRYAG 1 cut(s) 247
BglII AGATCT 1 cut(s) 70
BisI GCNGC 4 cut(s) 231, 234, 237, 423
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 4 cut(s) 232, 235, 238, 424
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 2 cut(s) 335, 446
BmeRI GACNNNNNGTC 1 cut(s) 23
BmgT120I GGNCC 4 cut(s) 258, 335, 400, 446
BmiI GGNNCC 2 cut(s) 313, 337
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 3 cut(s) 310, 474, 652
BpiI GAAGAC 1 cut(s) 562
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 481
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 254, 301, 315, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse8I GATNNNNATC 1 cut(s) 481
BseDI CCNNGG 4 cut(s) 254, 301, 315, 331
BseGI GGATG 2 cut(s) 166, 325
BseJI GATNNNNATC 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMII CTCAG 2 cut(s) 410, 452
BseXI GCAGC 2 cut(s) 220, 409
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 3 cut(s) 253, 260, 401
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 2 cut(s) 254, 321
BslI CCNNNNNNNGG 1 cut(s) 518
BsmFI GGGAC 2 cut(s) 254, 321
BsnI GGCC 3 cut(s) 253, 260, 401
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 3 cut(s) 70, 138, 523
Bsp19I CCATGG 3 cut(s) 301, 315, 331
BspACI CCGC 6 cut(s) 228, 231, 237, 499, 534, 545
BspANI GGCC 3 cut(s) 253, 260, 401
BspCNI CTCAG 2 cut(s) 409, 451
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 313, 337
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 311
BssECI CCNNGG 4 cut(s) 254, 301, 315, 331
BssMI GATC 3 cut(s) 70, 138, 523
BssNAI GTATAC 1 cut(s) 146
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 4 cut(s) 254, 301, 315, 331
Bst1107I GTATAC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 218, 396, 438
BstDSI CCRYGG 3 cut(s) 301, 315, 331
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 166, 325
BstFNI CGCG 1 cut(s) 433
BstKTI GATC 3 cut(s) 73, 141, 526
BstMBI GATC 3 cut(s) 70, 138, 523
BstMWI GCNNNNNNNGC 2 cut(s) 236, 542
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 247
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 220, 409
BstV2I GAAGAC 1 cut(s) 562
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 308
BstYI RGATCY 1 cut(s) 70
BstZ17I GTATAC 1 cut(s) 146
BsuRI GGCC 3 cut(s) 253, 260, 401
BtgI CCRYGG 3 cut(s) 301, 315, 331
BtsCI GGATG 2 cut(s) 166, 325
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 251
Cfr13I GGNCC 4 cut(s) 258, 335, 400, 446
CseI GACGC 2 cut(s) 283, 401
Csp6I GTAC 1 cut(s) 435
CviAII CATG 7 cut(s) 104, 133, 266, 302, 316, 332, 346
CviJI RGCY 6 cut(s) 97, 253, 260, 401, 422, 634
CviKI_1 RGCY 6 cut(s) 97, 253, 260, 401, 422, 634
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 3 cut(s) 218, 396, 438
DpnI GATC 3 cut(s) 72, 140, 525
DpnII GATC 3 cut(s) 70, 138, 523
DriI GACNNNNNGTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 4 cut(s) 254, 301, 315, 331
Eco147I AGGCCT 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 335, 446
Eco53kI GAGCTC 1 cut(s) 634
EcoICRI GAGCTC 1 cut(s) 634
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoT14I CCWWGG 4 cut(s) 254, 301, 315, 331
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 4 cut(s) 254, 301, 315, 331
FaeI CATG 7 cut(s) 107, 136, 269, 305, 319, 335, 349
FaqI GGGAC 2 cut(s) 254, 321
FatI CATG 7 cut(s) 103, 132, 265, 301, 315, 331, 345
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 231, 234, 237, 423
FokI GGATG 2 cut(s) 153, 332
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 4 cut(s) 231, 234, 237, 423
FspBI CTAG 3 cut(s) 12, 113, 255
GluI GCNGC 4 cut(s) 231, 234, 237, 423
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 3 cut(s) 253, 260, 401
HapII CCGG 1 cut(s) 213
HgaI GACGC 2 cut(s) 283, 401
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 7 cut(s) 107, 136, 269, 305, 319, 335, 349
HinfI GANTC 4 cut(s) 47, 196, 208, 482
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 289, 355, 365
Hpy166II GTNNAC 4 cut(s) 17, 146, 244, 449
Hpy188I TCNGA 2 cut(s) 441, 607
Hpy188III TCNNGA 1 cut(s) 637
Hpy8I GTNNAC 4 cut(s) 17, 146, 244, 449
Hpy99I CGWCG 2 cut(s) 580, 624
HpyCH4IV ACGT 2 cut(s) 57, 642
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 542
HpyF3I CTNAG 3 cut(s) 218, 396, 438
HpySE526I ACGT 2 cut(s) 57, 642
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 7 cut(s) 107, 136, 269, 305, 319, 335, 349
Kzo9I GATC 3 cut(s) 70, 138, 523
LmnI GCTCC 1 cut(s) 639
LpnPI CCDG 6 cut(s) 226, 235, 383, 504, 650, 672
Lsp1109I GCAGC 2 cut(s) 220, 409
LweI GCATC 3 cut(s) 310, 474, 652
MaeI CTAG 3 cut(s) 12, 113, 255
MaeII ACGT 2 cut(s) 57, 642
MaeIII GTNAC 6 cut(s) 25, 128, 223, 295, 361, 551
MalI GATC 3 cut(s) 72, 140, 525
MboI GATC 3 cut(s) 70, 138, 523
MboII GAAGA 2 cut(s) 80, 562
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 636
MluCI AATT 4 cut(s) 367, 539, 601, 624
MluI ACGCGT 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 454, 512
MnlI CCTC 1 cut(s) 424
MslI CAYNNNNRTG 2 cut(s) 306, 558
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 236, 542
NciI CCSGG 1 cut(s) 213
NcoI CCATGG 3 cut(s) 301, 315, 331
NdeII GATC 3 cut(s) 70, 138, 523
NlaIII CATG 7 cut(s) 107, 136, 269, 305, 319, 335, 349
NlaIV GGNNCC 2 cut(s) 313, 337
NmuCI GTSAC 6 cut(s) 25, 128, 223, 295, 361, 551
PceI AGGCCT 1 cut(s) 253
PfeI GAWTC 4 cut(s) 47, 196, 208, 482
PfoI TCCNGGA 1 cut(s) 211
PkrI GCNGC 4 cut(s) 232, 235, 238, 424
Psp124BI GAGCTC 1 cut(s) 636
PspN4I GGNNCC 2 cut(s) 313, 337
PspPI GGNCC 4 cut(s) 258, 335, 400, 446
PstI CTGCAG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 306, 558
SacI GAGCTC 1 cut(s) 636
SatI GCNGC 4 cut(s) 231, 234, 237, 423
Sau3AI GATC 3 cut(s) 70, 138, 523
Sau96I GGNCC 4 cut(s) 258, 335, 400, 446
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 636
SetI ASST 7 cut(s) 43, 60, 448, 507, 514, 636, 645
SfaNI GCATC 3 cut(s) 310, 474, 652
SfcI CTRYAG 1 cut(s) 247
SinI GGWCC 2 cut(s) 335, 446
SmiMI CAYNNNNRTG 2 cut(s) 306, 558
Sse9I AATT 4 cut(s) 367, 539, 601, 624
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 6 cut(s) 228, 231, 237, 499, 534, 545
SspMI CTAG 3 cut(s) 12, 113, 255
SstI GAGCTC 1 cut(s) 636
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 4 cut(s) 254, 301, 315, 331
TaiI ACGT 2 cut(s) 60, 645
TaqI TCGA 3 cut(s) 37, 84, 630
TaqII GACCGA 1 cut(s) 123
TasI AATT 4 cut(s) 367, 539, 601, 624
TauI GCSGC 2 cut(s) 233, 239
TfiI GAWTC 4 cut(s) 47, 196, 208, 482
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 6 cut(s) 25, 128, 223, 295, 361, 551
TseI GCWGC 2 cut(s) 233, 422
Tsp45I GTSAC 6 cut(s) 25, 128, 223, 295, 361, 551
TspDTI ATGAA 2 cut(s) 163, 495
TspGWI ACGGA 2 cut(s) 131, 177
TspRI CASTG 1 cut(s) 251
VpaK11BI GGWCC 2 cut(s) 335, 446
XagI CCTNNNNNAGG 1 cut(s) 516
XapI RAATTY 2 cut(s) 539, 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmaJI CCTAGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 3 cut(s) 12, 113, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.