Rmu_sc0016563.1_g000002

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016563.1
Physical Location & Seq
Reverse (-)
7285 .. 7593
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016563.1_g000002.1.cds

Sequence Viewer

Length: 309 bp
atgcctgatgcattcgctaacactgcaaaagtgacaagatcacatatcccaacaataaatgcaccggaaagaattaatgtccaaattggacaaaataatgtggcggccaatgagccatatgctgcacacctgaagcgtggcagacatgtaggttcaaaagattcagttcctagaaagaggaaattaaaggcacatttgaatcctgataaaatcacccctgaagagaatattgggcaagacattaatgtccgatccacaattcatgactatgtaactacagaagaagaaaatgacatcggtgagacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

6.97

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AciI CCGC 1 cut(s) 104
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 105
AcuI CTGAAG 2 cut(s) 152, 240
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 2 cut(s) 156, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 122
AseI ATTAAT 2 cut(s) 75, 243
AsuHPI GGTGA 1 cut(s) 205
BbvI GCAGC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 2 cut(s) 105, 123
BlsI GCNGC 2 cut(s) 106, 124
BsaWI WCCGGW 1 cut(s) 64
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 38, 251
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 107
BspHI TCATGA 1 cut(s) 262
BspPI GGATC 1 cut(s) 246
BssMI GATC 2 cut(s) 38, 251
Bst6I CTCTTC 1 cut(s) 216
BstKTI GATC 2 cut(s) 41, 254
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 2 cut(s) 38, 251
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 262
CviAII CATG 2 cut(s) 146, 263
CviJI RGCY 2 cut(s) 107, 115
CviKI_1 RGCY 2 cut(s) 107, 115
DpnI GATC 2 cut(s) 40, 253
DpnII GATC 2 cut(s) 38, 251
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 152, 240
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 2 cut(s) 149, 266
FaiI YATR 7 cut(s) 45, 118, 120, 147, 264, 270, 307
FatI CATG 2 cut(s) 145, 262
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 105, 123
Fsp4HI GCNGC 2 cut(s) 105, 123
FspBI CTAG 1 cut(s) 171
GluI GCNGC 2 cut(s) 105, 123
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 149, 266
HinfI GANTC 2 cut(s) 161, 199
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 2 cut(s) 203, 263
HpyCH4V TGCA 4 cut(s) 11, 26, 62, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 149, 266
Kzo9I GATC 2 cut(s) 38, 251
LpnPI CCDG 5 cut(s) 18, 78, 143, 216, 231
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 31, 271
MalI GATC 2 cut(s) 40, 253
MboI GATC 2 cut(s) 38, 251
MboII GAAGA 3 cut(s) 233, 293, 296
MluCI AATT 4 cut(s) 72, 84, 182, 258
MnlI CCTC 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 3 cut(s) 75, 185, 243
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 38, 251
NlaIII CATG 2 cut(s) 149, 266
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 149
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 145
PctI GAATGC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 161, 199
PkrI GCNGC 2 cut(s) 106, 124
PscI ACATGT 1 cut(s) 145
PshBI ATTAAT 2 cut(s) 75, 243
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 3 cut(s) 75, 185, 243
SatI GCNGC 2 cut(s) 105, 123
Sau3AI GATC 2 cut(s) 38, 251
SetI ASST 2 cut(s) 132, 154
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 4 cut(s) 72, 84, 182, 258
SsiI CCGC 1 cut(s) 104
SspI AATATT 1 cut(s) 229
SspMI CTAG 1 cut(s) 171
TasI AATT 4 cut(s) 72, 84, 182, 258
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 161, 199
Tru1I TTAA 3 cut(s) 75, 185, 243
Tru9I TTAA 3 cut(s) 75, 185, 243
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 1 cut(s) 28
VspI ATTAAT 2 cut(s) 75, 243
XceI RCATGY 1 cut(s) 149
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.