Rmu_sc0001698.1_g000009

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001698.1
OG0000161
Physical Location & Seq
Forward (+)
34181 .. 35041
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001698.1_g000009.1.cds

Sequence Viewer

Length: 861 bp
atgagcctgacatttcatactcacgcatatttggttgcgcaatatatatgcctattgcgcccccacaatgcactaaaatggggttctcagagacaattaagtatttatgttagatacaaatccccaacaattatccgctacttggaacccttgataggtgatctctttaccgctagatttgtggattgtcactttgatgagacagtcttcccggataggaaaaaatattttctaagggaacgacatgaattgtcgtggtttgtccccactctgtctcattttgatccccgcacttcacaatgtgaaagtgaagtgaaaagaataatcgatcttcagaaagtagccccaacaattatccgctacttggaacccttgataggtgatctctttacctctagatttgtggattgtcactttgatgagacagtcttcccggataggaaaaaatattttctaagggaacgacatgaattgtcgtggtttgtccccactctgtctcattttgatccccgcacttcacaatgtgaaagtgaagtgaaaataataatcgatcttcagaaagtagcagattcgatgcctgatgcttttactgatatcacaaaagtgacgagatcacatatactagctgcaaatgtgcctacatggttagaagttcccaacaaggggcacggtgctgcagatagaggcactgcaaccacacttagtgaaggtgtggttgaggccgtggttccccaaagagagagggggaggccacttggttcgattgacattcacccaaggaagaagaaggcgagtaaggcacaaaccgacccattaatcatcaatgtagagaattcctctcatgagattgtctctgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

286

Amino Acids

33.06

Weight (kDa)

7.74

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 39
AciI CCGC 5 cut(s) 136, 171, 289, 358, 511
AclWI GGATC 2 cut(s) 278, 500
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 2 cut(s) 317, 539
AdeI CACNNNGTG 3 cut(s) 302, 524, 704
AfiI CCNNNNNNNGG 6 cut(s) 142, 155, 364, 377, 662, 663
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 1 cut(s) 626
AluI AGCT 1 cut(s) 626
Alw26I GTCTC 6 cut(s) 85, 194, 279, 416, 501, 856
AlwI GGATC 2 cut(s) 278, 500
AoxI GGCC 2 cut(s) 720, 749
ApeKI GCWGC 2 cut(s) 626, 674
ApoI RAATTY 1 cut(s) 832
AseI ATTAAT 1 cut(s) 815
AspLEI GCGC 2 cut(s) 40, 60
AsuC2I CCSGG 2 cut(s) 212, 434
AsuHPI GGTGA 3 cut(s) 170, 392, 764
BaeGI GKGCMC 1 cut(s) 669
BbsI GAAGAC 2 cut(s) 199, 421
BbvI GCAGC 2 cut(s) 613, 661
BceAI ACGGC 1 cut(s) 707
BcnI CCSGG 2 cut(s) 212, 434
BcoDI GTCTC 6 cut(s) 85, 194, 279, 416, 501, 856
BfaI CTAG 3 cut(s) 174, 396, 623
BfmI CTRYAG 1 cut(s) 675
BisI GCNGC 2 cut(s) 627, 675
BlsI GCNGC 2 cut(s) 628, 676
Bme1390I CCNGG 2 cut(s) 212, 434
BmiI GGNNCC 3 cut(s) 147, 369, 729
BmrFI CCNGG 2 cut(s) 212, 434
BmsI GCATC 2 cut(s) 564, 571
BpiI GAAGAC 2 cut(s) 199, 421
BplI GAGNNNNNCTC 3 cut(s) 821, 853, 836
BpuMI CCSGG 2 cut(s) 212, 434
Bsa29I ATCGAT 2 cut(s) 327, 549
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 723, 776
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 155, 364, 377, 662, 663
Bse8I GATNNNNATC 1 cut(s) 118
BseCI ATCGAT 2 cut(s) 327, 549
BseDI CCNNGG 2 cut(s) 723, 776
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 6 cut(s) 142, 155, 364, 377, 662, 663
BseMII CTCAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 2 cut(s) 613, 661
BshFI GGCC 2 cut(s) 722, 751
BshVI ATCGAT 2 cut(s) 327, 549
BsiSI CCGG 2 cut(s) 212, 434
BslFI GGGAC 2 cut(s) 248, 470
BslI CCNNNNNNNGG 6 cut(s) 142, 155, 364, 377, 662, 663
BsmAI GTCTC 6 cut(s) 85, 194, 279, 416, 501, 856
BsmFI GGGAC 2 cut(s) 248, 470
BsnI GGCC 2 cut(s) 722, 751
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
BspACI CCGC 5 cut(s) 136, 171, 289, 358, 511
BspANI GGCC 2 cut(s) 722, 751
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 2 cut(s) 327, 549
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 3 cut(s) 147, 369, 729
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 2 cut(s) 278, 500
BssECI CCNNGG 2 cut(s) 723, 776
BssMI GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
BssT1I CCWWGG 1 cut(s) 776
Bst4CI ACNGT 3 cut(s) 205, 427, 671
BstDEI CTNAG 4 cut(s) 87, 233, 455, 701
BstDSI CCRYGG 1 cut(s) 723
BstHHI GCGC 2 cut(s) 40, 60
BstKTI GATC 7 cut(s) 163, 286, 331, 385, 508, 553, 614
BstMAI GTCTC 6 cut(s) 85, 194, 279, 416, 501, 856
BstMBI GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
BstMWI GCNNNNNNNGC 2 cut(s) 57, 797
BstSCI CCNGG 2 cut(s) 210, 432
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 613, 661
BstV2I GAAGAC 2 cut(s) 199, 421
Bsu15I ATCGAT 2 cut(s) 327, 549
BsuRI GGCC 2 cut(s) 722, 751
BsuTUI ATCGAT 2 cut(s) 327, 549
BtgI CCRYGG 1 cut(s) 723
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 687
CciI TCATGA 1 cut(s) 841
CfoI GCGC 2 cut(s) 40, 60
ClaI ATCGAT 2 cut(s) 327, 549
CviAII CATG 4 cut(s) 245, 467, 642, 842
CviJI RGCY 5 cut(s) 6, 344, 626, 722, 751
CviKI_1 RGCY 5 cut(s) 6, 344, 626, 722, 751
DdeI CTNAG 4 cut(s) 87, 233, 455, 701
DpnI GATC 7 cut(s) 162, 285, 330, 384, 507, 552, 613
DpnII GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
DraIII CACNNNGTG 3 cut(s) 302, 524, 704
Eco130I CCWWGG 1 cut(s) 776
Eco32I GATATC 1 cut(s) 595
Eco57I CTGAAG 2 cut(s) 317, 539
EcoRI GAATTC 1 cut(s) 832
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 776
FaeI CATG 4 cut(s) 248, 470, 645, 845
FaqI GGGAC 2 cut(s) 248, 470
FatI CATG 4 cut(s) 244, 466, 641, 841
FauI CCCGC 2 cut(s) 296, 518
Fnu4HI GCNGC 2 cut(s) 627, 675
Fsp4HI GCNGC 2 cut(s) 627, 675
FspBI CTAG 3 cut(s) 174, 396, 623
FspI TGCGCA 1 cut(s) 39
GlaI GCGC 2 cut(s) 39, 59
GluI GCNGC 2 cut(s) 627, 675
HaeIII GGCC 2 cut(s) 722, 751
HapII CCGG 2 cut(s) 212, 434
HhaI GCGC 2 cut(s) 40, 60
Hin1II CATG 4 cut(s) 248, 470, 645, 845
Hin6I GCGC 2 cut(s) 38, 58
HinP1I GCGC 2 cut(s) 38, 58
HinfI GANTC 1 cut(s) 569
HpaII CCGG 2 cut(s) 212, 434
HphI GGTGA 3 cut(s) 170, 392, 764
Hpy188I TCNGA 4 cut(s) 90, 336, 558, 856
Hpy188III TCNNGA 2 cut(s) 396, 842
HpyAV CCTTC 2 cut(s) 701, 781
HpyCH4III ACNGT 3 cut(s) 205, 427, 671
HpyCH4V TGCA 4 cut(s) 71, 629, 677, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 797
HpyF3I CTNAG 4 cut(s) 87, 233, 455, 701
Hsp92II CATG 4 cut(s) 248, 470, 645, 845
HspAI GCGC 2 cut(s) 38, 58
Kzo9I GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
LpnPI CCDG 4 cut(s) 20, 225, 447, 591
Lsp1109I GCAGC 2 cut(s) 613, 661
LweI GCATC 2 cut(s) 564, 571
MaeI CTAG 3 cut(s) 174, 396, 623
MaeIII GTNAC 3 cut(s) 188, 410, 604
MalI GATC 7 cut(s) 162, 285, 330, 384, 507, 552, 613
MboI GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
MboII GAAGA 6 cut(s) 199, 323, 421, 545, 793, 796
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 6 cut(s) 95, 129, 248, 351, 470, 832
MnlI CCTC 6 cut(s) 403, 677, 712, 735, 741, 847
MseI TTAA 3 cut(s) 98, 815, 859
MslI CAYNNNNRTG 4 cut(s) 76, 195, 417, 602
MspI CCGG 2 cut(s) 212, 434
MspR9I CCNGG 2 cut(s) 212, 434
MwoI GCNNNNNNNGC 2 cut(s) 57, 797
NciI CCSGG 2 cut(s) 212, 434
NdeII GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
NlaIII CATG 4 cut(s) 248, 470, 645, 845
NlaIV GGNNCC 3 cut(s) 147, 369, 729
NmuCI GTSAC 3 cut(s) 188, 410, 604
NsbI TGCGCA 1 cut(s) 39
OliI CACNNNNGTG 1 cut(s) 602
PagI TCATGA 1 cut(s) 841
PfeI GAWTC 1 cut(s) 569
PfoI TCCNGGA 2 cut(s) 210, 432
PkrI GCNGC 2 cut(s) 628, 676
PshBI ATTAAT 1 cut(s) 815
PspN4I GGNNCC 3 cut(s) 147, 369, 729
PstI CTGCAG 1 cut(s) 679
RseI CAYNNNNRTG 4 cut(s) 76, 195, 417, 602
SaqAI TTAA 3 cut(s) 98, 815, 859
SatI GCNGC 2 cut(s) 627, 675
Sau3AI GATC 7 cut(s) 160, 283, 328, 382, 505, 550, 611
ScrFI CCNGG 2 cut(s) 212, 434
SduI GDGCHC 1 cut(s) 669
SetI ASST 5 cut(s) 160, 382, 395, 628, 712
SfaNI GCATC 2 cut(s) 564, 571
SfcI CTRYAG 1 cut(s) 675
SmiMI CAYNNNNRTG 4 cut(s) 76, 195, 417, 602
Sse9I AATT 6 cut(s) 95, 129, 248, 351, 470, 832
SsiI CCGC 5 cut(s) 136, 171, 289, 358, 511
SspI AATATT 2 cut(s) 227, 449
SspMI CTAG 3 cut(s) 174, 396, 623
StyD4I CCNGG 2 cut(s) 210, 432
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 3 cut(s) 205, 427, 671
TaqI TCGA 4 cut(s) 327, 549, 572, 761
TasI AATT 6 cut(s) 95, 129, 248, 351, 470, 832
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 3 cut(s) 98, 815, 859
Tru9I TTAA 3 cut(s) 98, 815, 859
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 3 cut(s) 188, 410, 604
TseI GCWGC 2 cut(s) 626, 674
Tsp45I GTSAC 3 cut(s) 188, 410, 604
TspDTI ATGAA 3 cut(s) 5, 261, 483
TspRI CASTG 1 cut(s) 694
VspI ATTAAT 1 cut(s) 815
XapI RAATTY 1 cut(s) 832
XbaI TCTAGA 1 cut(s) 395
XspI CTAG 3 cut(s) 174, 396, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.