pycom13g26870

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000161
Physical Location & Seq
Forward (+)
23351167 .. 23352615
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26870.8

Sequence Viewer

Length: 1107 bp
ATGAATACTTGGTTGTTTGAGATGGTGATGGCAGGAATGAATCCACACAGGCCTCCCTCTCTTGTGCCTTCGTCAACCCCACTGTCATCTATGTCTCTGCAAGAACAACGCCAGTCTCTAGTAGCCTTTTGGATTGAATTGAATTTGGGCAACCTCCATAACTACCCAAAAAATAATAGAAAAGGGGGATTGATGGAATGGCAAGGCACATATAAAGAAGAAAAAAAGGGATTTGAATGGTGCATGACACCATTTGGTCAACATAATATAAATGGTTTCTGTTGGTGCATGGCACCATGCTGCAGAAATAAGAAAAGTAACAATAATAAGGATACTTCTTGTTATTTATGTGAATTGGTGTTGGTTGAAAACACTTTCACAAGTTCTATTTACTTTAAAGTAATTTATTTATCATGGAAGGTTTTACCGCCTACTGTTTTAAGTTTTGATTTATGTGAATGGTGCAATTTATTCATTATGGCTGGAATTACCGTCTATTGCTTTAATTTATTTATTGTACTTCTTTTTATTACGATGAGTACATATTGGACCCGAAGTTCCTTGATCAGATCAGAACCTGCATTCCATCAAACAAAAAGATCAGGCATGAAGTCCCTTGATCCTCAAGATCAGGACATGAAGTTCTTTGATAAGTACCTTAAGTTTGAAGAGCCAAAGTGCCTCAACTTAATTGCAATAAAAGTCATAAGAGTCTCAATATACAGACTATTAAATAAGGACCAGAAGTTCCTTATGTCCATACTCAAAAATGGTTTAGCAGAAACATTTATTAAGCAGATGAAATTGATTACCCGGGTACATGCTATTTTGCATGATGCATTATTGATTTGGTTGAGACCTGTTGACAACCATCAATACTTCTCAGTACAACTCGTGTTTGGGAACCAGCCAAACATTATACATTTACGAGTTTTTGGTTGTGTTATCTATGTGCCTATTGCACTGTCACAACATACTGAAATGAAGCATCATTATTTAAAACCCTTGACTGGGGATATATTTACCGCGTGGTTTGCGGACTGTCATTTTGATAAGACAATTTTCCCGCCGTTAGGGGGAGAAAATAACTTTGTTCCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

369

Amino Acids

42.9

Weight (kDa)

8.69

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 292
AccII CGCG 1 cut(s) 1028
AciI CCGC 4 cut(s) 428, 1026, 1037, 1067
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 5 cut(s) 519, 541, 656, 819, 888
AfiI CCNNNNNNNGG 4 cut(s) 1010, 1011, 1073, 1076
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 5 cut(s) 137, 142, 236, 368, 668
AloI GAACNNNNNNTCC 8 cut(s) 541, 567, 573, 599, 626, 658, 731, 763
Alw26I GTCTC 4 cut(s) 99, 120, 718, 850
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 1 cut(s) 813
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 142
ArsI GACNNNNNNTTYG 2 cut(s) 1031, 1063
AspS9I GGNCC 2 cut(s) 549, 739
AsuC2I CCSGG 2 cut(s) 814, 815
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 813
AvaII GGWCC 2 cut(s) 549, 739
BanI GGYRCC 1 cut(s) 292
BauI CACGAG 1 cut(s) 893
BbvI GCAGC 1 cut(s) 287
BccI CCATC 5 cut(s) 16, 22, 187, 594, 879
BceAI ACGGC 1 cut(s) 1054
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 564
BcnI CCSGG 2 cut(s) 814, 815
BcoDI GTCTC 4 cut(s) 99, 120, 718, 850
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 301
BfrI CTTAAG 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 586
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 814, 815
Bme18I GGWCC 2 cut(s) 549, 739
BmeT110I CYCGRG 1 cut(s) 813
BmgT120I GGNCC 2 cut(s) 549, 739
BmiI GGNNCC 3 cut(s) 294, 551, 905
BmrFI CCNGG 2 cut(s) 814, 815
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 2 cut(s) 826, 997
BmuI ACTGGG 1 cut(s) 1020
BpuEI CTTGAG 1 cut(s) 609
BpuMI CCSGG 2 cut(s) 814, 815
BsaI GGTCTC 1 cut(s) 850
BsaJI CCNNGG 1 cut(s) 813
Bsc4I CCNNNNNNNGG 4 cut(s) 1010, 1011, 1073, 1076
Bse1I ACTGG 2 cut(s) 112, 1015
BseDI CCNNGG 1 cut(s) 813
BseLI CCNNNNNNNGG 4 cut(s) 1010, 1011, 1073, 1076
BseMII CTCAG 1 cut(s) 897
BseNI ACTGG 2 cut(s) 112, 1015
BseXI GCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 1028
BshFI GGCC 1 cut(s) 52
BshNI GGYRCC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 1 cut(s) 814
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 4 cut(s) 1010, 1011, 1073, 1076
BsmAI GTCTC 4 cut(s) 99, 120, 718, 850
BsmFI GGGAC 1 cut(s) 598
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 1 cut(s) 52
Bso31I GGTCTC 1 cut(s) 850
BsoBI CYCGRG 1 cut(s) 813
Bsp143I GATC 5 cut(s) 564, 569, 599, 619, 628
BspACI CCGC 4 cut(s) 428, 1026, 1037, 1067
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 896
BspFNI CGCG 1 cut(s) 1028
BspLI GGNNCC 3 cut(s) 294, 551, 905
BspMAI CTGCAG 1 cut(s) 305
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 850
BsrI ACTGG 2 cut(s) 112, 1015
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 5 cut(s) 564, 569, 599, 619, 628
BssSI CACGAG 1 cut(s) 893
Bst2BI CACGAG 1 cut(s) 893
Bst4CI ACNGT 5 cut(s) 84, 436, 493, 966, 1043
Bst6I CTCTTC 1 cut(s) 663
BstAFI CTTAAG 1 cut(s) 659
BstDEI CTNAG 1 cut(s) 883
BstFNI CGCG 1 cut(s) 1028
BstKTI GATC 5 cut(s) 567, 572, 602, 622, 631
BstMAI GTCTC 4 cut(s) 99, 120, 718, 850
BstMBI GATC 5 cut(s) 564, 569, 599, 619, 628
BstMWI GCNNNNNNNGC 1 cut(s) 1034
BstNSI RCATGY 1 cut(s) 824
BstSCI CCNGG 2 cut(s) 812, 813
BstSFI CTRYAG 1 cut(s) 301
BstUI CGCG 1 cut(s) 1028
BstV1I GCAGC 1 cut(s) 287
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 80, 962
BveI ACCTGC 1 cut(s) 586
CaiI CAGNNNCTG 1 cut(s) 578
Cfr13I GGNCC 2 cut(s) 549, 739
Cfr9I CCCGGG 1 cut(s) 813
Csp6I GTAC 5 cut(s) 518, 540, 655, 818, 887
CviAII CATG 8 cut(s) 244, 289, 297, 414, 607, 637, 821, 833
CviJI RGCY 5 cut(s) 52, 125, 482, 673, 910
CviKI_1 RGCY 5 cut(s) 52, 125, 482, 673, 910
CviQI GTAC 5 cut(s) 518, 540, 655, 818, 887
DdeI CTNAG 1 cut(s) 883
DpnI GATC 5 cut(s) 566, 571, 601, 621, 630
DpnII GATC 5 cut(s) 564, 569, 599, 619, 628
DraI TTTAAA 2 cut(s) 397, 999
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco147I AGGCCT 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 850
Eco47I GGWCC 2 cut(s) 549, 739
Eco88I CYCGRG 1 cut(s) 813
EcoT22I ATGCAT 1 cut(s) 841
FaeI CATG 8 cut(s) 247, 292, 300, 417, 610, 640, 824, 836
FaqI GGGAC 1 cut(s) 598
FatI CATG 8 cut(s) 243, 288, 296, 413, 606, 636, 820, 832
FauI CCCGC 1 cut(s) 1074
FbaI TGATCA 1 cut(s) 564
Fnu4HI GCNGC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 814
Hin1II CATG 8 cut(s) 247, 292, 300, 417, 610, 640, 824, 836
HincII GTYRAC 3 cut(s) 75, 260, 865
HindII GTYRAC 3 cut(s) 75, 260, 865
HinfI GANTC 2 cut(s) 40, 711
HpaII CCGG 1 cut(s) 814
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 75, 260, 865
Hpy188I TCNGA 2 cut(s) 569, 574
Hpy188III TCNNGA 3 cut(s) 626, 632, 1097
Hpy8I GTNNAC 3 cut(s) 75, 260, 865
HpyAV CCTTC 2 cut(s) 78, 412
HpyCH4III ACNGT 5 cut(s) 84, 436, 493, 966, 1043
HpyF10VI GCNNNNNNNGC 1 cut(s) 1034
HpyF3I CTNAG 1 cut(s) 883
Hsp92II CATG 8 cut(s) 247, 292, 300, 417, 610, 640, 824, 836
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 5 cut(s) 564, 569, 599, 619, 628
LguI GCTCTTC 1 cut(s) 663
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 2 cut(s) 826, 997
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 317, 966
MalI GATC 5 cut(s) 566, 571, 601, 621, 630
MboI GATC 5 cut(s) 564, 569, 599, 619, 628
MboII GAAGA 2 cut(s) 230, 680
MlyI GAGTC 1 cut(s) 720
MnlI CCTC 5 cut(s) 63, 67, 164, 633, 692
Mph1103I ATGCAT 1 cut(s) 841
MseI TTAA 8 cut(s) 396, 440, 504, 660, 689, 731, 792, 998
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 1 cut(s) 814
MspR9I CCNGG 2 cut(s) 814, 815
Mva1269I GAATGC 1 cut(s) 581
MvnI CGCG 1 cut(s) 1028
MwoI GCNNNNNNNGC 1 cut(s) 1034
NciI CCSGG 2 cut(s) 814, 815
NdeII GATC 5 cut(s) 564, 569, 599, 619, 628
NlaIII CATG 8 cut(s) 247, 292, 300, 417, 610, 640, 824, 836
NlaIV GGNNCC 3 cut(s) 294, 551, 905
NmuCI GTSAC 1 cut(s) 966
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 1 cut(s) 824
PceI AGGCCT 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 663
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PspN4I GGNNCC 3 cut(s) 294, 551, 905
PspPI GGNCC 2 cut(s) 549, 739
PstI CTGCAG 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 578
RsaI GTAC 5 cut(s) 519, 541, 656, 819, 888
RsaNI GTAC 5 cut(s) 518, 540, 655, 818, 887
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 8 cut(s) 396, 440, 504, 660, 689, 731, 792, 998
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 5 cut(s) 564, 569, 599, 619, 628
Sau96I GGNCC 2 cut(s) 549, 739
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 2 cut(s) 814, 815
SetI ASST 5 cut(s) 156, 423, 580, 660, 862
SfaNI GCATC 2 cut(s) 826, 997
SfcI CTRYAG 1 cut(s) 301
SinI GGWCC 2 cut(s) 549, 739
SmaI CCCGGG 1 cut(s) 815
SmlI CTYRAG 2 cut(s) 624, 659
SmoI CTYRAG 2 cut(s) 624, 659
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 4 cut(s) 428, 1026, 1037, 1067
SspMI CTAG 1 cut(s) 119
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 812, 813
TaaI ACNGT 5 cut(s) 84, 436, 493, 966, 1043
TatI WGTACW 3 cut(s) 517, 539, 886
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 8 cut(s) 396, 440, 504, 660, 689, 731, 792, 998
Tru9I TTAA 8 cut(s) 396, 440, 504, 660, 689, 731, 792, 998
TscAI CASTG 2 cut(s) 87, 969
TseFI GTSAC 1 cut(s) 966
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 966
TspDTI ATGAA 7 cut(s) 17, 53, 463, 623, 653, 815, 998
TspMI CCCGGG 1 cut(s) 813
TspRI CASTG 2 cut(s) 87, 969
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 549, 739
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 824
XmaI CCCGGG 1 cut(s) 813
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.