Rmu_sc0002968.1_g000015

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002968.1
OG0000161
Physical Location & Seq
Reverse (-)
79378 .. 80184
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002968.1_g000015.1.cds

Sequence Viewer

Length: 807 bp
atggattctcagagacgattaggtatttatgttggatacgaatccccaaccattaaccgctatttggaacccttgacaggcgatctctttaccactagatttgtcgttgatgagacggtcttcccgtcgttagggggagatcgaaaaaagaattttccaagagaacgacagaaattgtcatggtttgaccccactctgtctcatttggatccccgcacttcacaatgtaaaagtaaagtgaaaagaataatcgatcttccgaacgtagcagattcgatgcctgatgcgtttactgatattacaaaagtgacaaaatcacatataccagctgcaaatgtgcctgcaaggttagaagtccccaaaaagaggcaagacgctgcagatagaggcgctgcaaccatacttaatggaggtgtggtcgagttcgtggctccccaaaggaagagggggaggccacttggttccattgacactcacctaaggaagaagtgggcgagtaaggcacaaactgatccattaatcatccatgtagagaatccctctcttgagattgtctctggttataattatgtctatgaatcaatactgaaggacgctctgatatttgaaatgattccagagaataaagaaatatcaatggattatgagagtgcgtatgagttgattgaaagatcctccatacacattgatgatgtatttgcatacactgtttctcaagaaatcatagagcacgatgatatcgaaccatgctctgttgcagaatgtcaacaaagagcagattggcctaaatggaaagaagcaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

268

Amino Acids

30.52

Weight (kDa)

5.76

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AciI CCGC 2 cut(s) 58, 214
AclWI GGATC 4 cut(s) 203, 216, 506, 666
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 608
AfiI CCNNNNNNNGG 4 cut(s) 64, 77, 131, 366
AgsI TTSAA 2 cut(s) 608, 668
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 4 cut(s) 7, 107, 204, 559
AlwI GGATC 4 cut(s) 203, 216, 506, 666
AoxI GGCC 2 cut(s) 452, 782
ApeKI GCWGC 3 cut(s) 329, 377, 392
ApoI RAATTY 1 cut(s) 151
AseI ATTAAT 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 467
AxyI CCTNAGG 1 cut(s) 479
BamHI GGATCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 3 cut(s) 316, 364, 379
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 4 cut(s) 7, 107, 204, 559
BfaI CTAG 2 cut(s) 96, 805
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 393
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 3 cut(s) 330, 378, 393
BlsI GCNGC 3 cut(s) 331, 379, 394
BmiI GGNNCC 4 cut(s) 69, 210, 432, 463
BmsI GCATC 2 cut(s) 267, 274
BpiI GAAGAC 1 cut(s) 112
BplI GAGNNNNNCTC 4 cut(s) 524, 556, 539, 571
BpuEI CTTGAG 2 cut(s) 566, 699
Bsa29I ATCGAT 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 77, 131, 366
Bse21I CCTNAGG 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 252
BseGI GGATG 1 cut(s) 522
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 4 cut(s) 64, 77, 131, 366
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 316, 364, 379
BshFI GGCC 2 cut(s) 454, 784
BshVI ATCGAT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 732
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 4 cut(s) 64, 77, 131, 366
BsmAI GTCTC 4 cut(s) 7, 107, 204, 559
BsmBI CGTCTC 2 cut(s) 7, 107
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 2 cut(s) 454, 784
Bsp1286I GDGCHC 1 cut(s) 732
Bsp143I GATC 6 cut(s) 82, 139, 208, 253, 511, 671
BspACI CCGC 2 cut(s) 58, 214
BspANI GGCC 2 cut(s) 454, 784
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 252
BspLI GGNNCC 4 cut(s) 69, 210, 432, 463
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 4 cut(s) 203, 216, 506, 666
BssMI GATC 6 cut(s) 82, 139, 208, 253, 511, 671
Bst4CI ACNGT 2 cut(s) 118, 709
Bst6I CTCTTC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 9, 479
BstF5I GGATG 1 cut(s) 522
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 6 cut(s) 85, 142, 211, 256, 514, 674
BstMAI GTCTC 4 cut(s) 7, 107, 204, 559
BstMBI GATC 6 cut(s) 82, 139, 208, 253, 511, 671
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 3 cut(s) 316, 364, 379
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 208, 671
BstYI RGATCY 2 cut(s) 208, 671
Bsu15I ATCGAT 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 479
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 454, 784
BsuTUI ATCGAT 1 cut(s) 252
BtsCI GGATG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 252
CseI GACGC 2 cut(s) 383, 602
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 3 cut(s) 180, 527, 747
CviJI RGCY 4 cut(s) 329, 431, 454, 784
CviKI_1 RGCY 4 cut(s) 329, 431, 454, 784
DdeI CTNAG 2 cut(s) 9, 479
DpnI GATC 6 cut(s) 84, 141, 210, 255, 513, 673
DpnII GATC 6 cut(s) 82, 139, 208, 253, 511, 671
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco32I GATATC 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 479
EcoRV GATATC 1 cut(s) 739
Esp3I CGTCTC 2 cut(s) 7, 107
FaeI CATG 3 cut(s) 183, 530, 750
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 179, 526, 746
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 330, 378, 393
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 3 cut(s) 330, 378, 393
FspBI CTAG 2 cut(s) 96, 805
GlaI GCGC 1 cut(s) 391
GluI GCNGC 3 cut(s) 330, 378, 393
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 2 cut(s) 454, 784
HgaI GACGC 2 cut(s) 383, 602
HhaI GCGC 1 cut(s) 392
Hin1II CATG 3 cut(s) 183, 530, 750
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HinfI GANTC 6 cut(s) 5, 41, 272, 535, 578, 613
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 291, 767
Hpy188I TCNGA 3 cut(s) 12, 261, 600
Hpy188III TCNNGA 3 cut(s) 545, 617, 716
Hpy8I GTNNAC 2 cut(s) 291, 767
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 2 cut(s) 118, 709
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 6 cut(s) 332, 344, 380, 395, 701, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 9, 479
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 3 cut(s) 183, 530, 750
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 6 cut(s) 82, 139, 208, 253, 511, 671
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 6 cut(s) 63, 294, 339, 354, 543, 630
Lsp1109I GCAGC 3 cut(s) 316, 364, 379
LweI GCATC 2 cut(s) 267, 274
MaeI CTAG 2 cut(s) 96, 805
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 307
MalI GATC 6 cut(s) 84, 141, 210, 255, 513, 673
MboI GATC 6 cut(s) 82, 139, 208, 253, 511, 671
MboII GAAGA 4 cut(s) 112, 248, 454, 496
MflI RGATCY 2 cut(s) 208, 671
MhlI GDGCHC 1 cut(s) 732
MluCI AATT 3 cut(s) 151, 173, 565
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 7 cut(s) 360, 380, 404, 438, 444, 550, 685
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 3 cut(s) 54, 405, 518
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 500
NdeII GATC 6 cut(s) 82, 139, 208, 253, 511, 671
NlaIII CATG 3 cut(s) 183, 530, 750
NlaIV GGNNCC 4 cut(s) 69, 210, 432, 463
NmuCI GTSAC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 738
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 6 cut(s) 5, 41, 272, 535, 578, 613
PkrI GCNGC 3 cut(s) 331, 379, 394
PshBI ATTAAT 1 cut(s) 518
PsiI TTATAA 1 cut(s) 564
PspN4I GGNNCC 4 cut(s) 69, 210, 432, 463
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 2 cut(s) 208, 671
PvuII CAGCTG 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 3 cut(s) 54, 405, 518
SatI GCNGC 3 cut(s) 330, 378, 393
Sau3AI GATC 6 cut(s) 82, 139, 208, 253, 511, 671
SduI GDGCHC 1 cut(s) 732
SetI ASST 6 cut(s) 25, 267, 331, 350, 415, 480
SfaNI GCATC 2 cut(s) 267, 274
SfcI CTRYAG 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 2 cut(s) 545, 714
SmoI CTYRAG 2 cut(s) 545, 714
Sse9I AATT 3 cut(s) 151, 173, 565
SsiI CCGC 2 cut(s) 58, 214
SspMI CTAG 2 cut(s) 96, 805
TaaI ACNGT 2 cut(s) 118, 709
TaiI ACGT 1 cut(s) 267
TaqI TCGA 5 cut(s) 142, 252, 275, 420, 741
TasI AATT 3 cut(s) 151, 173, 565
TfiI GAWTC 6 cut(s) 5, 41, 272, 535, 578, 613
Tru1I TTAA 3 cut(s) 54, 405, 518
Tru9I TTAA 3 cut(s) 54, 405, 518
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 329, 377, 392
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 591
TspRI CASTG 1 cut(s) 712
VspI ATTAAT 1 cut(s) 518
XapI RAATTY 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 2 cut(s) 96, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.