Rmu_sc0003737.1_g000033

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003737.1
OG0000161
Physical Location & Seq
Forward (+)
128949 .. 129326
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003737.1_g000033.1.cds

Sequence Viewer

Length: 378 bp
atggttgaggctgtggctcctcaaaggaagagggggaggcgacttggttcgattgacactcacccaaggaagaagagggcgagtaaggcacaaaccgatccattaatcatcaatgtagagaatccctctcatgagattgtctctgattatagttatgtccatgaatcaatactggaggacgctccgatgtttgaaatgatttcagagaacaaagaaatctcaatggattatgagagcgcgtatgagttgatagaaagatcttccgtacacattgatgatgtatttgcatacactgttgctcaagaaatcatagagcacgatgatatcgaaccacgctcggttgcagaatgtcaacaaagagcagattggcctaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

125

Amino Acids

14.43

Weight (kDa)

4.88

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 239
AclWI GGATC 1 cut(s) 92
AfaI GTAC 1 cut(s) 267
AgsI TTSAA 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 92
AoxI GGCC 1 cut(s) 368
AseI ATTAAT 1 cut(s) 104
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 145
BglII AGATCT 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 18
BplI GAGNNNNNCTC 4 cut(s) 110, 142, 125, 157
BpmI CTGGAG 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 97, 257
BspANI GGCC 1 cut(s) 370
BspFNI CGCG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 97, 257
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 2 cut(s) 23, 68
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 2 cut(s) 100, 260
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 97, 257
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstUI CGCG 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 291
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 239
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 131, 161
CviJI RGCY 3 cut(s) 11, 17, 370
CviKI_1 RGCY 3 cut(s) 11, 17, 370
CviQI GTAC 1 cut(s) 266
DpnI GATC 2 cut(s) 99, 259
DpnII GATC 2 cut(s) 97, 257
Eam1104I CTCTTC 2 cut(s) 23, 68
EarI CTCTTC 2 cut(s) 23, 68
Eco130I CCWWGG 1 cut(s) 65
Eco32I GATATC 1 cut(s) 325
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 134, 164
FaiI YATR 8 cut(s) 132, 150, 156, 162, 231, 243, 289, 311
FatI CATG 2 cut(s) 130, 160
GlaI GCGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 370
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 134, 164
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 2 cut(s) 121, 164
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 268, 353
Hpy188I TCNGA 3 cut(s) 145, 186, 205
Hpy188III TCNNGA 2 cut(s) 131, 302
Hpy8I GTNNAC 2 cut(s) 268, 353
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 287, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 134, 164
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 97, 257
LmnI GCTCC 2 cut(s) 22, 187
LpnPI CCDG 1 cut(s) 158
MalI GATC 2 cut(s) 99, 259
MboI GATC 2 cut(s) 97, 257
MboII GAAGA 4 cut(s) 40, 82, 85, 252
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 318
MnlI CCTC 6 cut(s) 24, 30, 30, 69, 136, 169
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 273
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 2 cut(s) 97, 257
NlaIII CATG 2 cut(s) 134, 164
NlaIV GGNNCC 1 cut(s) 18
PagI TCATGA 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PfeI GAWTC 2 cut(s) 121, 164
PshBI ATTAAT 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 104
Sau3AI GATC 2 cut(s) 97, 257
SduI GDGCHC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 50, 327
TfiI GAWTC 2 cut(s) 121, 164
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 298
VspI ATTAAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.