Rmu_sc0004741.1_g000017

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004741.1
Physical Location & Seq
Reverse (-)
75166 .. 75525
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004741.1_g000017.1.cds

Sequence Viewer

Length: 360 bp
atgagcaccaagctcctagtttttgcgtggggctatgcaatattgcatgcagctatgttggtcccgttgaggcccactgctaccaaccttactccgcggaatacgtggaatgtccccactatgtctcatcttgatccccgaaccgcacaatgtgataatgaagtgcgcagaattctatatctacagagtgtagcccaaaatatgccagacgttttctctgatctagctaaagtgacgagatcatatatacctgctgcaaatgtgcctgcaaggatagacgtccatgtaggatgtgtcgtcccagatggacgaggtacgaccatggcggctatccagtcatatgtccctgccctgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.09

Weight (kDa)

9.44

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc16I TGCGCA 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 259
AccII CGCG 1 cut(s) 97
AciI CCGC 4 cut(s) 95, 97, 144, 326
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 1 cut(s) 316
AluBI AGCT 3 cut(s) 13, 53, 227
AluI AGCT 3 cut(s) 13, 53, 227
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 50, 254
ApoI RAATTY 1 cut(s) 171
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 61, 72
AvaII GGWCC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 62, 241
BccI CCATC 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 17, 224
BfmI CTRYAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 3 cut(s) 51, 255, 327
BlsI GCNGC 3 cut(s) 52, 256, 328
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 61, 72
BmiI GGNNCC 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 95, 321
Bse1I ACTGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 95, 321
BseGI GGATG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 62, 241
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 4 cut(s) 47, 98, 284, 329
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 4 cut(s) 47, 98, 284, 329
BsnI GGCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 133, 220, 239
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 4 cut(s) 95, 97, 144, 326
BspANI GGCC 1 cut(s) 73
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 95, 321
BssMI GATC 3 cut(s) 133, 220, 239
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 48, 267
BstDSI CCRYGG 2 cut(s) 95, 321
BstF5I GGATG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 3 cut(s) 136, 223, 242
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 133, 220, 239
BstNSI RCATGY 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 62, 241
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 2 cut(s) 95, 321
BtsCI GGATG 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 48, 267
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 61, 72
Cfr42I CCGCGG 1 cut(s) 98
Csp6I GTAC 1 cut(s) 315
CviAII CATG 3 cut(s) 47, 284, 322
CviJI RGCY 7 cut(s) 13, 33, 53, 73, 194, 227, 329
CviKI_1 RGCY 7 cut(s) 13, 33, 53, 73, 194, 227, 329
CviQI GTAC 1 cut(s) 315
DpnI GATC 3 cut(s) 135, 222, 241
DpnII GATC 3 cut(s) 133, 220, 239
DraIII CACNNNGTG 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 50, 287, 325
FaqI GGGAC 4 cut(s) 47, 98, 284, 329
FatI CATG 3 cut(s) 46, 283, 321
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 51, 255, 327
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 51, 255, 327
FspBI CTAG 2 cut(s) 17, 224
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 1 cut(s) 167
GluI GCNGC 3 cut(s) 51, 255, 327
HaeIII GGCC 1 cut(s) 73
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 3 cut(s) 50, 287, 325
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4IV ACGT 3 cut(s) 104, 210, 279
HpyCH4V TGCA 5 cut(s) 38, 46, 50, 257, 269
HpySE526I ACGT 3 cut(s) 104, 210, 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 3 cut(s) 50, 287, 325
HspAI GCGC 1 cut(s) 166
KspI CCGCGG 1 cut(s) 98
Kzo9I GATC 3 cut(s) 133, 220, 239
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 5 cut(s) 219, 264, 279, 315, 347
Lsp1109I GCAGC 2 cut(s) 62, 241
MaeI CTAG 2 cut(s) 17, 224
MaeII ACGT 3 cut(s) 104, 210, 279
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 135, 222, 241
MboI GATC 3 cut(s) 133, 220, 239
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 171
MnlI CCTC 2 cut(s) 63, 305
MspA1I CMGCKG 1 cut(s) 97
MvnI CGCG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 321
NdeI CATATG 1 cut(s) 340
NdeII GATC 3 cut(s) 133, 220, 239
NlaIII CATG 3 cut(s) 50, 287, 325
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 232
NsbI TGCGCA 1 cut(s) 167
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 52, 256, 328
Ppu21I YACGTR 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 61, 72
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SacII CCGCGG 1 cut(s) 98
SatI GCNGC 3 cut(s) 51, 255, 327
Sau3AI GATC 3 cut(s) 133, 220, 239
Sau96I GGNCC 2 cut(s) 61, 72
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 15, 55, 90, 107, 213, 229, 253, 282, 316
SfcI CTRYAG 1 cut(s) 182
Sfr303I CCGCGG 1 cut(s) 98
SgrBI CCGCGG 1 cut(s) 98
SinI GGWCC 1 cut(s) 61
SphI GCATGC 1 cut(s) 50
Sse9I AATT 1 cut(s) 171
SsiI CCGC 4 cut(s) 95, 97, 144, 326
SspI AATATT 1 cut(s) 42
SspMI CTAG 2 cut(s) 17, 224
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 3 cut(s) 107, 213, 282
TasI AATT 1 cut(s) 171
TauI GCSGC 1 cut(s) 329
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 50, 254
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 171
XceI RCATGY 1 cut(s) 50
XspI CTAG 2 cut(s) 17, 224
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.