Rmu_sc0006152.1_g000005

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006152.1
Physical Location & Seq
Reverse (-)
13236 .. 13643
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006152.1_g000005.1.cds

Sequence Viewer

Length: 408 bp
atgagacagtctttccgtcgtgagggggagataggaaaaaggattttccaaagggaacgacaggaattgtcgtggtttgtccccactctgtctcattttgatccccgcagttcacaaagtgaaactgaagtgaaaagaataatcgatcttcagaacgtagcagattcgatgcctaatgcgtttactgatatcgaaaaagtgacgagatcacatataccagctgtaaatgtgcctgcaaggttagaagtccctaacaaggggcacggtgccgcagatagaggcactgcaaccgcacttagtggaggtgtggttgaggccgtcgctccccatggaagagggggaggtcacttggttcgattgacactcacccaaggaagaatagggcgagtaaggctgaaagtgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

14.94

Weight (kDa)

11.02

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 3 cut(s) 106, 270, 291
AclWI GGATC 1 cut(s) 95
AcuI CTGAAG 2 cut(s) 134, 147
AdeI CACNNNGTG 2 cut(s) 119, 299
AfiI CCNNNNNNNGG 3 cut(s) 22, 256, 257
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 96
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 159
Bsa29I ATCGAT 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 328, 370
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 256, 257
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 328, 370
BseLI CCNNNNNNNGG 3 cut(s) 22, 256, 257
BseSI GKGCMC 1 cut(s) 264
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 144
BslFI GGGAC 2 cut(s) 65, 233
BslI CCNNNNNNNGG 3 cut(s) 22, 256, 257
BsmAI GTCTC 1 cut(s) 96
BsmFI GGGAC 2 cut(s) 65, 233
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 100, 145, 206
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 3 cut(s) 106, 270, 291
BspANI GGCC 1 cut(s) 317
BspDI ATCGAT 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 328, 370
BssMI GATC 3 cut(s) 100, 145, 206
BssT1I CCWWGG 2 cut(s) 328, 370
Bst4CI ACNGT 2 cut(s) 9, 266
Bst6I CTCTTC 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 328
BstKTI GATC 3 cut(s) 103, 148, 209
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 3 cut(s) 100, 145, 206
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 264
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 144
CviAII CATG 1 cut(s) 329
CviJI RGCY 3 cut(s) 221, 317, 394
CviKI_1 RGCY 3 cut(s) 221, 317, 394
DdeI CTNAG 1 cut(s) 296
DpnI GATC 3 cut(s) 102, 147, 208
DpnII GATC 3 cut(s) 100, 145, 206
DraIII CACNNNGTG 2 cut(s) 119, 299
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 328, 370
Eco32I GATATC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 134, 147
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 328, 370
ErhI CCWWGG 2 cut(s) 328, 370
FaeI CATG 1 cut(s) 332
FaiI YATR 3 cut(s) 213, 215, 330
FaqI GGGAC 2 cut(s) 65, 233
FatI CATG 1 cut(s) 328
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 1 cut(s) 317
Hin1II CATG 1 cut(s) 332
HinfI GANTC 1 cut(s) 164
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 2 cut(s) 113, 183
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 2 cut(s) 113, 183
Hpy99I CGWCG 2 cut(s) 21, 323
HpyCH4III ACNGT 2 cut(s) 9, 266
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 236, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 332
Kzo9I GATC 3 cut(s) 100, 145, 206
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 3 cut(s) 47, 231, 246
LweI GCATC 1 cut(s) 159
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 199, 344
MalI GATC 3 cut(s) 102, 147, 208
MboI GATC 3 cut(s) 100, 145, 206
MboII GAAGA 3 cut(s) 140, 345, 387
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 65
MnlI CCTC 6 cut(s) 16, 272, 296, 307, 329, 335
MspA1I CMGCKG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 391
NcoI CCATGG 1 cut(s) 328
NdeII GATC 3 cut(s) 100, 145, 206
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 199, 344
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 221
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 100, 145, 206
SduI GDGCHC 1 cut(s) 264
SetI ASST 5 cut(s) 159, 223, 242, 307, 346
SfaNI GCATC 1 cut(s) 159
Sse9I AATT 1 cut(s) 65
SsiI CCGC 3 cut(s) 106, 270, 291
StyI CCWWGG 2 cut(s) 328, 370
TaaI ACNGT 2 cut(s) 9, 266
TaiI ACGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 144, 167, 192, 355
TasI AATT 1 cut(s) 65
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 199, 344
Tsp45I GTSAC 2 cut(s) 199, 344
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.