Rroxscaffold_3G00226440

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000161
Physical Location & Seq
Forward (+)
9950114 .. 9956846
6733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226440.1

Sequence Viewer

Length: 588 bp
ATGGCTCAACTTGATTCTTCCCTGGTTGCTTCTAAAGCCCATCTTTCGTTTTGCAAAGCCTGCTCTTTAGCAAAATTAGGATCAAGACCATCCTATGCAAAGGACACTAAGGAAAATATTCCATTCTTGCAAAGAATCCAAGGTGATATTTGTGGACCTATTCAACCAACTTGCGGACCATTTAGATATTTTATGGTGTTGGTTGATGCATCGACACGTTGGTCACACGTTATGCTCTTGTCCACAAGGAATGCTGCATTTGCTAAACTCCTAGCACAAATCATTAAATTAAGGGCTCACAACCACGATCATCCCATTAAGTCAATTCGTCTTGACAATGCGGAGAGTTTACATAAAAAACATTTGATGACTATTGAATGTCCATTTGGATTGAGGTTGAACACCCTGTTCCTCATGTTCACTCCCAAAATGATCTCGCGAAAGCTGCCATTAAAAGACTTCAAATGGTGGCAAGAGCATTGGTTATGCGCACCAATCTCCTGTTTCGCAGGGCTATGCAATATTGCATGCAGCTGTGCTCATTCGTACGAGGCCTACGCCACTCAACCCTTTTCGCGTCCCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

195

Amino Acids

22.04

Weight (kDa)

9.42

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 220
Acc16I TGCGCA 1 cut(s) 490
AccII CGCG 2 cut(s) 439, 577
AciI CCGC 2 cut(s) 174, 341
AclWI GGATC 1 cut(s) 88
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 2 cut(s) 215, 226
AgsI TTSAA 4 cut(s) 164, 377, 400, 463
AjnI CCWGG 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 2 cut(s) 445, 534
AluI AGCT 2 cut(s) 445, 534
Alw21I GWGCWC 1 cut(s) 541
AlwI GGATC 1 cut(s) 88
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 3 cut(s) 254, 445, 531
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 155, 176
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 2 cut(s) 155, 176
BanII GRGCYC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 3 cut(s) 241, 432, 543
BccI CCATC 2 cut(s) 48, 97
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 1 cut(s) 582
BfaI CTAG 1 cut(s) 272
BisI GCNGC 3 cut(s) 255, 446, 532
BlsI GCNGC 3 cut(s) 256, 447, 533
Bme1390I CCNGG 2 cut(s) 23, 582
Bme18I GGWCC 2 cut(s) 155, 176
BmgT120I GGNCC 2 cut(s) 155, 176
BmrFI CCNGG 2 cut(s) 23, 582
BmsI GCATC 2 cut(s) 196, 218
BpuMI CCSGG 1 cut(s) 582
BsaJI CCNNGG 2 cut(s) 21, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 21, 139
BseGI GGATG 2 cut(s) 89, 310
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 241, 432, 543
Bsh1236I CGCG 2 cut(s) 439, 577
BshFI GGCC 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 1 cut(s) 582
BsiWI CGTACG 1 cut(s) 546
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 298, 541
Bsp143I GATC 3 cut(s) 80, 307, 432
Bsp68I TCGCGA 1 cut(s) 439
BspACI CCGC 2 cut(s) 174, 341
BspANI GGCC 1 cut(s) 554
BspFNI CGCG 2 cut(s) 439, 577
BspPI GGATC 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 21, 139
BssMI GATC 3 cut(s) 80, 307, 432
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 61, 529
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 89, 310
BstFNI CGCG 2 cut(s) 439, 577
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 3 cut(s) 83, 310, 435
BstMBI GATC 3 cut(s) 80, 307, 432
BstMWI GCNNNNNNNGC 4 cut(s) 35, 60, 260, 445
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 21, 580
BstUI CGCG 2 cut(s) 439, 577
BstV1I GCAGC 3 cut(s) 241, 432, 543
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 2 cut(s) 89, 310
BtuMI TCGCGA 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 61, 529
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 155, 176
CseI GACGC 1 cut(s) 566
Csp6I GTAC 1 cut(s) 547
CviAII CATG 2 cut(s) 415, 528
CviJI RGCY 8 cut(s) 5, 38, 59, 296, 445, 514, 534, 554
CviKI_1 RGCY 8 cut(s) 5, 38, 59, 296, 445, 514, 534, 554
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 82, 309, 434
DpnII GATC 3 cut(s) 80, 307, 432
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 155, 176
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 418, 531
FaiI YATR 8 cut(s) 96, 194, 233, 354, 416, 487, 517, 529
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 564
FatI CATG 2 cut(s) 414, 527
Fnu4HI GCNGC 3 cut(s) 255, 446, 532
FokI GGATG 2 cut(s) 76, 297
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 3 cut(s) 255, 446, 532
FspAI RTGCGCAY 1 cut(s) 490
FspBI CTAG 1 cut(s) 272
FspI TGCGCA 1 cut(s) 490
GlaI GCGC 1 cut(s) 490
GluI GCNGC 3 cut(s) 255, 446, 532
HaeIII GGCC 1 cut(s) 554
HapII CCGG 1 cut(s) 582
HgaI GACGC 1 cut(s) 566
HhaI GCGC 1 cut(s) 491
Hin1II CATG 2 cut(s) 418, 531
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 2 cut(s) 14, 135
HpaII CCGG 1 cut(s) 582
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 4 cut(s) 155, 243, 350, 420
Hpy188III TCNNGA 3 cut(s) 84, 332, 438
Hpy8I GTNNAC 4 cut(s) 155, 243, 350, 420
HpyCH4IV ACGT 2 cut(s) 217, 228
HpyCH4V TGCA 8 cut(s) 54, 98, 130, 209, 257, 519, 527, 531
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 60, 260, 445
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 217, 228
Hsp92II CATG 2 cut(s) 418, 531
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 3 cut(s) 80, 307, 432
LpnPI CCDG 6 cut(s) 8, 35, 73, 419, 495, 514
Lsp1109I GCAGC 3 cut(s) 241, 432, 543
LweI GCATC 2 cut(s) 196, 218
MaeI CTAG 1 cut(s) 272
MaeII ACGT 2 cut(s) 217, 228
MaeIII GTNAC 1 cut(s) 222
MalI GATC 3 cut(s) 82, 309, 434
MboI GATC 3 cut(s) 80, 307, 432
MboII GAAGA 1 cut(s) 9
MhlI GDGCHC 2 cut(s) 298, 541
MluCI AATT 3 cut(s) 74, 287, 324
MnlI CCTC 3 cut(s) 387, 422, 544
Mph1103I ATGCAT 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 4 cut(s) 285, 290, 318, 452
MspA1I CMGCKG 1 cut(s) 534
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 2 cut(s) 23, 582
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 2 cut(s) 439, 577
MwoI GCNNNNNNNGC 4 cut(s) 35, 60, 260, 445
NciI CCSGG 1 cut(s) 582
NdeII GATC 3 cut(s) 80, 307, 432
NlaIII CATG 2 cut(s) 418, 531
NmuCI GTSAC 1 cut(s) 222
NruI TCGCGA 1 cut(s) 439
NsbI TGCGCA 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 531
PaeI GCATGC 1 cut(s) 531
PceI AGGCCT 1 cut(s) 554
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 14, 135
Pfl23II CGTACG 1 cut(s) 546
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 3 cut(s) 256, 447, 533
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspLI CGTACG 1 cut(s) 546
PspPI GGNCC 2 cut(s) 155, 176
PvuII CAGCTG 1 cut(s) 534
RruI TCGCGA 1 cut(s) 439
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
SaqAI TTAA 4 cut(s) 285, 290, 318, 452
SatI GCNGC 3 cut(s) 255, 446, 532
Sau3AI GATC 3 cut(s) 80, 307, 432
Sau96I GGNCC 2 cut(s) 155, 176
ScrFI CCNGG 2 cut(s) 23, 582
SduI GDGCHC 2 cut(s) 298, 541
SetI ASST 7 cut(s) 145, 160, 220, 231, 398, 447, 536
SfaNI GCATC 2 cut(s) 196, 218
SinI GGWCC 2 cut(s) 155, 176
SphI GCATGC 1 cut(s) 531
Sse9I AATT 3 cut(s) 74, 287, 324
SseBI AGGCCT 1 cut(s) 554
SsiI CCGC 2 cut(s) 174, 341
SspI AATATT 2 cut(s) 118, 523
SspMI CTAG 1 cut(s) 272
StuI AGGCCT 1 cut(s) 554
StyD4I CCNGG 2 cut(s) 21, 580
StyI CCWWGG 1 cut(s) 139
TaiI ACGT 2 cut(s) 220, 231
TaqI TCGA 1 cut(s) 212
TasI AATT 3 cut(s) 74, 287, 324
TfiI GAWTC 2 cut(s) 14, 135
Tru1I TTAA 4 cut(s) 285, 290, 318, 452
Tru9I TTAA 4 cut(s) 285, 290, 318, 452
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 3 cut(s) 254, 445, 531
Tsp45I GTSAC 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 155, 176
XceI RCATGY 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.