Rmu_sc0022402.1_g000002

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022402.1
Physical Location & Seq
Reverse (-)
479 .. 871
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022402.1_g000002.1.cds

Sequence Viewer

Length: 393 bp
atgatttttctaagggaacgacaggaattgtcgtggtgtgtccccattctgtctcgttttgatccccgcacttcacaatgtgaaagtgaagtgaaaagaataatcgatcttcagaacatagcagattcgatgactgatgcgtttactgatatcgcaaaagtgacgagatcacatataccagctgcaaatgtgcctccaaggttagaagtccccaacaaggggcacggtgccgcagatagaggaactacaaccacacttagtggaggtgtggttgagcccgtggctccccaaaggaagagggggaggccacttggttcaattgacactcacccaaggaagaagatggcgagtaaggcacaaaccgatcatcaatgtatagaatccctctcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.37

Weight (kDa)

9.25

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 2 cut(s) 67, 231
AclWI GGATC 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 95
AdeI CACNNNGTG 2 cut(s) 80, 260
AfiI CCNNNNNNNGG 3 cut(s) 217, 218, 219
AgsI TTSAA 1 cut(s) 318
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 56
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 57
BisI GCNGC 2 cut(s) 183, 231
BlsI GCNGC 2 cut(s) 184, 232
BmiI GGNNCC 2 cut(s) 229, 285
BmsI GCATC 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 197, 279, 332
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 218, 219
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 197, 279, 332
BseLI CCNNNNNNNGG 3 cut(s) 217, 218, 219
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 227
BshVI ATCGAT 1 cut(s) 105
BslFI GGGAC 2 cut(s) 26, 194
BslI CCNNNNNNNGG 3 cut(s) 217, 218, 219
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 26, 194
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 225, 279
Bsp143I GATC 4 cut(s) 61, 106, 167, 364
BspACI CCGC 2 cut(s) 67, 231
BspANI GGCC 1 cut(s) 307
BspDI ATCGAT 1 cut(s) 105
BspHI TCATGA 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 229, 285
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 227
BssECI CCNNGG 3 cut(s) 197, 279, 332
BssMI GATC 4 cut(s) 61, 106, 167, 364
BssT1I CCWWGG 2 cut(s) 197, 332
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 11, 257
BstDSI CCRYGG 1 cut(s) 279
BstKTI GATC 4 cut(s) 64, 109, 170, 367
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 4 cut(s) 61, 106, 167, 364
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 1 cut(s) 307
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 279
CciI TCATGA 1 cut(s) 389
ClaI ATCGAT 1 cut(s) 105
CviAII CATG 1 cut(s) 390
CviJI RGCY 4 cut(s) 182, 277, 284, 307
CviKI_1 RGCY 4 cut(s) 182, 277, 284, 307
DdeI CTNAG 2 cut(s) 11, 257
DpnI GATC 4 cut(s) 63, 108, 169, 366
DpnII GATC 4 cut(s) 61, 106, 167, 364
DraIII CACNNNGTG 2 cut(s) 80, 260
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 197, 332
Eco24I GRGCYC 1 cut(s) 279
Eco32I GATATC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 197, 332
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 197, 332
FaeI CATG 1 cut(s) 393
FaiI YATR 5 cut(s) 119, 174, 176, 377, 391
FaqI GGGAC 2 cut(s) 26, 194
FatI CATG 1 cut(s) 389
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 183, 231
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 183, 231
GluI GCNGC 2 cut(s) 183, 231
HaeIII GGCC 1 cut(s) 307
Hin1II CATG 1 cut(s) 393
HinfI GANTC 2 cut(s) 125, 380
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 2 cut(s) 11, 257
Hsp92II CATG 1 cut(s) 393
Kzo9I GATC 4 cut(s) 61, 106, 167, 364
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 2 cut(s) 8, 192
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 160
MalI GATC 4 cut(s) 63, 108, 169, 366
MboI GATC 4 cut(s) 61, 106, 167, 364
MboII GAAGA 4 cut(s) 101, 307, 349, 352
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 2 cut(s) 225, 279
MluCI AATT 2 cut(s) 26, 318
MnlI CCTC 5 cut(s) 204, 233, 257, 291, 297
MspA1I CMGCKG 1 cut(s) 182
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 4 cut(s) 61, 106, 167, 364
NlaIII CATG 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 229, 285
NmuCI GTSAC 1 cut(s) 160
PagI TCATGA 1 cut(s) 389
PfeI GAWTC 2 cut(s) 125, 380
PkrI GCNGC 2 cut(s) 184, 232
PspN4I GGNNCC 2 cut(s) 229, 285
PvuII CAGCTG 1 cut(s) 182
SatI GCNGC 2 cut(s) 183, 231
Sau3AI GATC 4 cut(s) 61, 106, 167, 364
SduI GDGCHC 2 cut(s) 225, 279
SetI ASST 3 cut(s) 184, 203, 268
SfaNI GCATC 1 cut(s) 127
Sse9I AATT 2 cut(s) 26, 318
SsiI CCGC 2 cut(s) 67, 231
StyI CCWWGG 2 cut(s) 197, 332
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 105, 128
TasI AATT 2 cut(s) 26, 318
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 125, 380
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.