Rmu_sc0006952.1_g000003

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006952.1
OG0000161
Physical Location & Seq
Forward (+)
8404 .. 9030
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006952.1_g000003.1.cds

Sequence Viewer

Length: 627 bp
atgagcctgacatttcacacttacgcatattttggttgcgcagtatatgtgcctattgcacccccacagcgcactaaaatggttcatcagagacgattaagtatttatgttggatacgaatcccaaacaattatcagctacttggaacccttgacaagcgatctctttaccgctagatttgcggattgtcactttgatgagacagtcttcacatcgttaagaagagataggaaaaaggattttccaagggaacgacaggaattgtcgtggtttgtccccactctgtctcattttgatccccgcacttcacaaagtgaaagtgaagtgaaaagaataatcgatcttcaaaacgtagcagattcgatgcgtgatgcgtttactgatatcgcaaaagtgacgagatcacatataccagctacaaatgtgcctgcaaggttagaagtccccaacaaggggcacagtgcctcagatagagtcactgcaaccacacttagtggaggtgtggttgaggccatggctccccaaaggaagagggggaggccacttggttcgattgacactcacccaaggaagaagagggcgagtaaggcacaaaccaatcatcaatgtatagaatccctctcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

208

Amino Acids

23.62

Weight (kDa)

9.6

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 40
AciI CCGC 3 cut(s) 171, 182, 301
AclWI GGATC 1 cut(s) 290
AdeI CACNNNGTG 2 cut(s) 314, 494
AfiI CCNNNNNNNGG 3 cut(s) 451, 452, 453
AgsI TTSAA 1 cut(s) 347
AluBI AGCT 2 cut(s) 138, 416
AluI AGCT 2 cut(s) 138, 416
Alw26I GTCTC 3 cut(s) 85, 194, 291
AlwI GGATC 1 cut(s) 290
AoxI GGCC 2 cut(s) 510, 539
AspLEI GCGC 2 cut(s) 41, 72
AsuHPI GGTGA 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 199
BciVI GTATCC 1 cut(s) 107
BcoDI GTCTC 3 cut(s) 85, 194, 291
BfaI CTAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 147, 519
BmsI GCATC 2 cut(s) 354, 361
BpiI GAAGAC 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 245, 513, 566
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 452, 453
Bse8I GATNNNNATC 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 245, 513, 566
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 3 cut(s) 451, 452, 453
BseMII CTCAG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 459
BshFI GGCC 2 cut(s) 512, 541
BshVI ATCGAT 1 cut(s) 339
BslFI GGGAC 2 cut(s) 260, 428
BslI CCNNNNNNNGG 3 cut(s) 451, 452, 453
BsmAI GTCTC 3 cut(s) 85, 194, 291
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 2 cut(s) 260, 428
BsnI GGCC 2 cut(s) 512, 541
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 4 cut(s) 160, 295, 340, 401
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 3 cut(s) 171, 182, 301
BspANI GGCC 2 cut(s) 512, 541
BspCNI CTCAG 1 cut(s) 479
BspDI ATCGAT 1 cut(s) 339
BspHI TCATGA 1 cut(s) 623
BspLI GGNNCC 2 cut(s) 147, 519
BspPI GGATC 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 245, 513, 566
BssMI GATC 4 cut(s) 160, 295, 340, 401
BssT1I CCWWGG 3 cut(s) 245, 513, 566
Bst4CI ACNGT 2 cut(s) 205, 461
Bst6I CTCTTC 3 cut(s) 217, 524, 569
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 2 cut(s) 466, 491
BstDSI CCRYGG 1 cut(s) 513
BstHHI GCGC 2 cut(s) 41, 72
BstKTI GATC 4 cut(s) 163, 298, 343, 404
BstMAI GTCTC 3 cut(s) 85, 194, 291
BstMBI GATC 4 cut(s) 160, 295, 340, 401
BstMWI GCNNNNNNNGC 2 cut(s) 179, 587
BstSLI GKGCMC 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 339
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 512, 541
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 513
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 466, 477
Cac8I GCNNGC 1 cut(s) 429
CciI TCATGA 1 cut(s) 623
CfoI GCGC 2 cut(s) 41, 72
ClaI ATCGAT 1 cut(s) 339
CviAII CATG 2 cut(s) 514, 624
CviJI RGCY 6 cut(s) 6, 138, 416, 512, 518, 541
CviKI_1 RGCY 6 cut(s) 6, 138, 416, 512, 518, 541
DdeI CTNAG 2 cut(s) 466, 491
DpnI GATC 4 cut(s) 162, 297, 342, 403
DpnII GATC 4 cut(s) 160, 295, 340, 401
DraIII CACNNNGTG 2 cut(s) 314, 494
Eam1104I CTCTTC 3 cut(s) 217, 524, 569
EarI CTCTTC 3 cut(s) 217, 524, 569
Eco130I CCWWGG 3 cut(s) 245, 513, 566
Eco32I GATATC 1 cut(s) 385
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 3 cut(s) 245, 513, 566
ErhI CCWWGG 3 cut(s) 245, 513, 566
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 517, 627
FaiI YATR 9 cut(s) 28, 46, 48, 108, 408, 410, 515, 611, 625
FaqI GGGAC 2 cut(s) 260, 428
FatI CATG 2 cut(s) 513, 623
FauI CCCGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 174
FspI TGCGCA 1 cut(s) 40
GlaI GCGC 2 cut(s) 40, 71
HaeIII GGCC 2 cut(s) 512, 541
HhaI GCGC 2 cut(s) 41, 72
Hin1II CATG 2 cut(s) 517, 627
Hin6I GCGC 2 cut(s) 39, 70
HinP1I GCGC 2 cut(s) 39, 70
HinfI GANTC 4 cut(s) 119, 359, 474, 614
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 2 cut(s) 90, 469
Hpy188III TCNNGA 1 cut(s) 624
Hpy8I GTNNAC 1 cut(s) 378
HpyCH4III ACNGT 2 cut(s) 205, 461
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 59, 431, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 587
HpyF3I CTNAG 2 cut(s) 466, 491
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 2 cut(s) 517, 627
HspAI GCGC 2 cut(s) 39, 70
Kzo9I GATC 4 cut(s) 160, 295, 340, 401
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 4 cut(s) 20, 242, 426, 441
LweI GCATC 2 cut(s) 354, 361
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 3 cut(s) 188, 394, 475
MalI GATC 4 cut(s) 162, 297, 342, 403
MboI GATC 4 cut(s) 160, 295, 340, 401
MboII GAAGA 6 cut(s) 199, 234, 335, 541, 583, 586
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 2 cut(s) 129, 260
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 6 cut(s) 475, 491, 502, 525, 531, 570
MseI TTAA 2 cut(s) 98, 218
MslI CAYNNNNRTG 2 cut(s) 77, 195
MwoI GCNNNNNNNGC 2 cut(s) 179, 587
NcoI CCATGG 1 cut(s) 513
NdeII GATC 4 cut(s) 160, 295, 340, 401
NlaIII CATG 2 cut(s) 517, 627
NlaIV GGNNCC 2 cut(s) 147, 519
NmuCI GTSAC 3 cut(s) 188, 394, 475
NsbI TGCGCA 1 cut(s) 40
PagI TCATGA 1 cut(s) 623
PfeI GAWTC 3 cut(s) 119, 359, 614
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 147, 519
RseI CAYNNNNRTG 2 cut(s) 77, 195
SaqAI TTAA 2 cut(s) 98, 218
Sau3AI GATC 4 cut(s) 160, 295, 340, 401
SchI GAGTC 1 cut(s) 483
SduI GDGCHC 1 cut(s) 459
SetI ASST 5 cut(s) 140, 354, 418, 437, 502
SfaNI GCATC 2 cut(s) 354, 361
SmiMI CAYNNNNRTG 2 cut(s) 77, 195
Sse9I AATT 2 cut(s) 129, 260
SsiI CCGC 3 cut(s) 171, 182, 301
SspMI CTAG 1 cut(s) 174
StyI CCWWGG 3 cut(s) 245, 513, 566
TaaI ACNGT 2 cut(s) 205, 461
TaiI ACGT 1 cut(s) 354
TaqI TCGA 3 cut(s) 339, 362, 551
TasI AATT 2 cut(s) 129, 260
TfiI GAWTC 3 cut(s) 119, 359, 614
Tru1I TTAA 2 cut(s) 98, 218
Tru9I TTAA 2 cut(s) 98, 218
TscAI CASTG 2 cut(s) 466, 484
TseFI GTSAC 3 cut(s) 188, 394, 475
Tsp45I GTSAC 3 cut(s) 188, 394, 475
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 2 cut(s) 466, 484
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.