Rmu_co8429419.1_g000001

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8429419.1
OG0000161
Physical Location & Seq
Reverse (-)
1 .. 1482
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8429419.1_g000001.1.cds

Sequence Viewer

Length: 664 bp
tccccactttgtctcattttgatccctgcacttcacaatgtgaaagtgaagtgaaaagaataatcgatcttcagaacgtagcagattcgatacctgatacgtttactgatattgcaaaagtgactagatcacatataccagctgcaaacttgcctgtaaggttagaagtccccaacaaagggcacagtgcaacagatagaggcgctgcaaccatacttagtggaggtgtggttgaggccgtggctccccaaaggaagagggggaggccacttggttcgattgacactcgcccaaggaagaagagggacgctccgatgtttgaaatgattccagggaacaaagaaatctcaatggattatgagagtgctggaggcgttccaggcggcggcgaaggcgcacggcttgcaggagggaggcttgaggcatcttggactgttctgagcagtgttcaaggtcggaggaggtcagggttgcaggttctgagcagcaactcgacctgcaactgcaggttttctaggcagccctccaacgatgtcgcgggcgactccatcgactgcagacggctccgcccgacccctggcgtccttccggcaaccctcaccgctcagtcacgccccgagccgagctgcagcagcgccgtccgcactttagcgaaagtgcagac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

221

Amino Acids

23.54

Weight (kDa)

9.54

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 465, 497, 505
AccBSI CCGCTC 1 cut(s) 604
AccII CGCG 1 cut(s) 538
AciI CCGC 6 cut(s) 383, 386, 538, 567, 602, 642
AclWI GGATC 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 581
AdeI CACNNNGTG 1 cut(s) 40
AfiI CCNNNNNNNGG 4 cut(s) 178, 179, 385, 577
AgsI TTSAA 2 cut(s) 322, 451
AjnI CCWGG 3 cut(s) 330, 378, 576
AluBI AGCT 2 cut(s) 142, 626
AluI AGCT 2 cut(s) 142, 626
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 616
AoxI GGCC 2 cut(s) 236, 265
ApeKI GCWGC 7 cut(s) 142, 205, 485, 519, 626, 629, 632
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 3 cut(s) 205, 397, 637
AsuHPI GGTGA 1 cut(s) 591
AvaI CYCGRG 1 cut(s) 616
BaeGI GKGCMC 1 cut(s) 185
BbvI GCAGC 7 cut(s) 129, 192, 497, 531, 613, 641, 644
BccI CCATC 1 cut(s) 556
BceAI ACGGC 4 cut(s) 223, 415, 577, 622
BciT130I CCWGG 3 cut(s) 332, 380, 578
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 2 cut(s) 125, 515
BfmI CTRYAG 3 cut(s) 504, 555, 627
BfoI RGCGCY 2 cut(s) 206, 638
BfuAI ACCTGC 3 cut(s) 465, 497, 505
BisI GCNGC 9 cut(s) 143, 206, 384, 387, 486, 520, 627, 630, 633
BlsI GCNGC 9 cut(s) 144, 207, 385, 388, 487, 521, 628, 631, 634
Bme1390I CCNGG 3 cut(s) 332, 380, 578
BmeT110I CYCGRG 1 cut(s) 616
BmiI GGNNCC 2 cut(s) 245, 565
BmrFI CCNGG 3 cut(s) 332, 380, 578
BmsI GCATC 1 cut(s) 433
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BpmI CTGGAG 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 4 cut(s) 239, 292, 331, 576
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 179, 385, 577
BseBI CCWGG 3 cut(s) 332, 380, 578
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 4 cut(s) 239, 292, 331, 576
BseLI CCNNNNNNNGG 4 cut(s) 178, 179, 385, 577
BseMII CTCAG 3 cut(s) 430, 472, 619
BseRI GAGGAG 1 cut(s) 474
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 7 cut(s) 129, 192, 497, 531, 613, 641, 644
BsgI GTGCAG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 538
BshFI GGCC 2 cut(s) 238, 267
BshVI ATCGAT 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 1 cut(s) 589
BslFI GGGAC 2 cut(s) 154, 319
BslI CCNNNNNNNGG 4 cut(s) 178, 179, 385, 577
BsmAI GTCTC 1 cut(s) 17
BsmFI GGGAC 2 cut(s) 154, 319
BsnI GGCC 2 cut(s) 238, 267
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 3 cut(s) 21, 66, 127
BspACI CCGC 6 cut(s) 383, 386, 538, 567, 602, 642
BspANI GGCC 2 cut(s) 238, 267
BspCNI CTCAG 3 cut(s) 431, 473, 618
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 245, 565
BspMAI CTGCAG 3 cut(s) 508, 559, 631
BspMI ACCTGC 3 cut(s) 465, 497, 505
BspPI GGATC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 604
BssECI CCNNGG 4 cut(s) 239, 292, 331, 576
BssMI GATC 3 cut(s) 21, 66, 127
BssNI GRCGYC 1 cut(s) 581
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 3 cut(s) 332, 380, 578
Bst4CI ACNGT 2 cut(s) 187, 435
Bst6I CTCTTC 2 cut(s) 250, 295
BstACI GRCGYC 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 404, 540
BstDEI CTNAG 4 cut(s) 217, 439, 481, 605
BstDSI CCRYGG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 538
BstH2I RGCGCY 2 cut(s) 206, 638
BstHHI GCGC 3 cut(s) 205, 397, 637
BstKTI GATC 3 cut(s) 24, 69, 130
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 3 cut(s) 21, 66, 127
BstMWI GCNNNNNNNGC 5 cut(s) 380, 392, 403, 632, 641
BstNI CCWGG 3 cut(s) 332, 380, 578
BstSCI CCNGG 3 cut(s) 330, 378, 576
BstSFI CTRYAG 3 cut(s) 504, 555, 627
BstSLI GKGCMC 1 cut(s) 185
BstUI CGCG 1 cut(s) 538
BstV1I GCAGC 7 cut(s) 129, 192, 497, 531, 613, 641, 644
Bsu15I ATCGAT 1 cut(s) 65
BsuRI GGCC 2 cut(s) 238, 267
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 239
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 192, 450
BveI ACCTGC 3 cut(s) 465, 497, 505
Cac8I GCNNGC 2 cut(s) 404, 540
CaiI CAGNNNCTG 1 cut(s) 480
CfoI GCGC 3 cut(s) 205, 397, 637
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 2 cut(s) 316, 570
DdeI CTNAG 4 cut(s) 217, 439, 481, 605
DpnI GATC 3 cut(s) 23, 68, 129
DpnII GATC 3 cut(s) 21, 66, 127
DraIII CACNNNGTG 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 250, 295
EarI CTCTTC 2 cut(s) 250, 295
EciI GGCGGA 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 616
EcoRII CCWGG 3 cut(s) 330, 378, 576
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaiI YATR 4 cut(s) 134, 136, 214, 359
FaqI GGGAC 2 cut(s) 154, 319
FauI CCCGC 1 cut(s) 531
Fnu4HI GCNGC 9 cut(s) 143, 206, 384, 387, 486, 520, 627, 630, 633
Fsp4HI GCNGC 9 cut(s) 143, 206, 384, 387, 486, 520, 627, 630, 633
FspBI CTAG 2 cut(s) 125, 515
GlaI GCGC 3 cut(s) 204, 396, 636
GluI GCNGC 9 cut(s) 143, 206, 384, 387, 486, 520, 627, 630, 633
GsuI CTGGAG 1 cut(s) 389
HaeII RGCGCY 2 cut(s) 206, 638
HaeIII GGCC 2 cut(s) 238, 267
HapII CCGG 1 cut(s) 589
HgaI GACGC 2 cut(s) 316, 570
HhaI GCGC 3 cut(s) 205, 397, 637
Hin1I GRCGYC 1 cut(s) 581
Hin6I GCGC 3 cut(s) 203, 395, 635
HinP1I GCGC 3 cut(s) 203, 395, 635
HinfI GANTC 3 cut(s) 85, 327, 544
HpaII CCGG 1 cut(s) 589
HphI GGTGA 1 cut(s) 591
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 5 cut(s) 74, 314, 440, 458, 482
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 385, 595
HpyCH4III ACNGT 2 cut(s) 187, 435
HpyCH4IV ACGT 2 cut(s) 77, 100
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 392, 403, 632, 641
HpyF3I CTNAG 4 cut(s) 217, 439, 481, 605
HpySE526I ACGT 2 cut(s) 77, 100
Hsp92I GRCGYC 1 cut(s) 581
HspAI GCGC 3 cut(s) 203, 395, 635
Kzo9I GATC 3 cut(s) 21, 66, 127
LmnI GCTCC 3 cut(s) 249, 315, 569
Lsp1109I GCAGC 7 cut(s) 129, 192, 497, 531, 613, 641, 644
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 125, 515
MaeII ACGT 2 cut(s) 77, 100
MaeIII GTNAC 2 cut(s) 120, 608
MalI GATC 3 cut(s) 23, 68, 129
MbiI CCGCTC 1 cut(s) 604
MboI GATC 3 cut(s) 21, 66, 127
MboII GAAGA 4 cut(s) 61, 267, 309, 312
MhlI GDGCHC 1 cut(s) 185
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 2 cut(s) 436, 551
MroXI GAANNNNTTC 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 589
MspR9I CCNGG 3 cut(s) 332, 380, 578
MvaI CCWGG 3 cut(s) 332, 380, 578
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 5 cut(s) 380, 392, 403, 632, 641
NdeII GATC 3 cut(s) 21, 66, 127
NlaIV GGNNCC 2 cut(s) 245, 565
NmeAIII GCCGAG 1 cut(s) 647
NmuCI GTSAC 2 cut(s) 120, 608
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 85, 327
PkrI GCNGC 9 cut(s) 144, 207, 385, 388, 487, 521, 628, 631, 634
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
Psp6I CCWGG 3 cut(s) 330, 378, 576
PspGI CCWGG 3 cut(s) 330, 378, 576
PspN4I GGNNCC 2 cut(s) 245, 565
PstI CTGCAG 3 cut(s) 508, 559, 631
PstNI CAGNNNCTG 1 cut(s) 480
PvuII CAGCTG 1 cut(s) 142
SatI GCNGC 9 cut(s) 143, 206, 384, 387, 486, 520, 627, 630, 633
Sau3AI GATC 3 cut(s) 21, 66, 127
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 3 cut(s) 332, 380, 578
SduI GDGCHC 1 cut(s) 185
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 3 cut(s) 504, 555, 627
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
SsiI CCGC 6 cut(s) 383, 386, 538, 567, 602, 642
SspMI CTAG 2 cut(s) 125, 515
StyD4I CCNGG 3 cut(s) 330, 378, 576
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 187, 435
TaiI ACGT 2 cut(s) 80, 103
TaqI TCGA 5 cut(s) 65, 88, 277, 493, 551
TauI GCSGC 2 cut(s) 386, 389
TfiI GAWTC 2 cut(s) 85, 327
TscAI CASTG 2 cut(s) 192, 450
TseFI GTSAC 2 cut(s) 120, 608
TseI GCWGC 7 cut(s) 142, 205, 485, 519, 626, 629, 632
Tsp45I GTSAC 2 cut(s) 120, 608
TspRI CASTG 2 cut(s) 192, 450
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 125, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.