Rmu_sc0040377.1_g000001

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040377.1
OG0000161
Physical Location & Seq
Reverse (-)
574 .. 1029
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040377.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atgggtcctcagagacgaataagtatttatgttggatacgaaactccaacaattatccgctacttggaacccttgacaagcgatctctttacccctagatttgcggattgtcactttgatgagacagtcttcccgtcgttagggggaaataggaaaaaggatttttcaagggaacgacaggaattgtcatggtttgtccccacccgcacttcacaaagtgaaagtgaagtgaaaagaataatcaatcttcagaacgtagtagattcgatgcctggtgagtttactgatatcgcaaaagtgacgagatcacatataccagctgcaaatgtgcctgcaagtttagaagtccccaacaaggggcacagcgcctcagatagaggcactgcaaccacacttagtggaggtgtggttgaggctgtggctccccaaaggaagagggggaggccacttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

151

Amino Acids

16.78

Weight (kDa)

9.24

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 58, 104, 205
AcuI CTGAAG 1 cut(s) 233
AdeI CACNNNGTG 2 cut(s) 218, 398
AfiI CCNNNNNNNGG 5 cut(s) 64, 140, 355, 356, 357
AgsI TTSAA 1 cut(s) 168
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 7, 116
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 273
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 7, 116
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 369
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 69, 423
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 140, 355, 356, 357
BseBI CCWGG 1 cut(s) 273
BseLI CCNNNNNNNGG 5 cut(s) 64, 140, 355, 356, 357
BseMII CTCAG 2 cut(s) 23, 384
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 1 cut(s) 445
BslFI GGGAC 2 cut(s) 182, 332
BslI CCNNNNNNNGG 5 cut(s) 64, 140, 355, 356, 357
BsmAI GTCTC 2 cut(s) 7, 116
BsmBI CGTCTC 1 cut(s) 7
BsmFI GGGAC 2 cut(s) 182, 332
BsnI GGCC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 82, 305
BspACI CCGC 3 cut(s) 58, 104, 205
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 2 cut(s) 22, 383
BspLI GGNNCC 3 cut(s) 6, 69, 423
BssMI GATC 2 cut(s) 82, 305
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 9, 370, 395
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 2 cut(s) 85, 308
BstMAI GTCTC 2 cut(s) 7, 116
BstMBI GATC 2 cut(s) 82, 305
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 121
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 5
CviAII CATG 1 cut(s) 189
CviJI RGCY 4 cut(s) 320, 416, 422, 445
CviKI_1 RGCY 4 cut(s) 320, 416, 422, 445
DdeI CTNAG 3 cut(s) 9, 370, 395
DpnI GATC 2 cut(s) 84, 307
DpnII GATC 2 cut(s) 82, 305
DraIII CACNNNGTG 2 cut(s) 218, 398
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 271
EcoRV GATATC 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 1 cut(s) 192
FaiI YATR 4 cut(s) 30, 190, 312, 314
FaqI GGGAC 2 cut(s) 182, 332
FatI CATG 1 cut(s) 188
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 1 cut(s) 445
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 1 cut(s) 263
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 3 cut(s) 12, 252, 373
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 323, 335, 386
HpyF3I CTNAG 3 cut(s) 9, 370, 395
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 2 cut(s) 82, 305
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 5 cut(s) 164, 258, 285, 330, 345
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 110, 298
MalI GATC 2 cut(s) 84, 307
MboI GATC 2 cut(s) 82, 305
MboII GAAGA 3 cut(s) 121, 239, 445
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 51, 182
MmeI TCCRAC 2 cut(s) 13, 71
MnlI CCTC 7 cut(s) 18, 371, 379, 395, 406, 429, 435
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
NdeII GATC 2 cut(s) 82, 305
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 3 cut(s) 6, 69, 423
NmuCI GTSAC 2 cut(s) 110, 298
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 3 cut(s) 6, 69, 423
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 117
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 2 cut(s) 82, 305
Sau96I GGNCC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 363
SetI ASST 3 cut(s) 258, 322, 406
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 2 cut(s) 51, 182
SsiI CCGC 3 cut(s) 58, 104, 205
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 266
TasI AATT 2 cut(s) 51, 182
TfiI GAWTC 1 cut(s) 263
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 2 cut(s) 110, 298
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 2 cut(s) 110, 298
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 5
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.