Rmu_sc0004835.1_g000027

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004835.1
Physical Location & Seq
Forward (+)
95484 .. 96023
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004835.1_g000027.1.cds

Sequence Viewer

Length: 540 bp
atgcctgatgcgtttattgatatcgcaaaagtgacgagatcacatataccagctgcaaatgtgcctgcaaggttagaagttcctaacaaggggcacagcgctgcaaccacacttagtggaggtgtggttgaggctgtggctctccaaaggaagagggggaggccacatggttggattcacactcacccaaggaagaagagggcgagtaaggcacaaaccgatccattaatcatcaatgtagagaatccctctcatgagattgtctctgattatagttatgtccatgaatcaatactggaggacgctccgatgtttgaaatgattctagagaacaaagaaatctcaatggattatgacagtgtgtatgagttgatagaaagatcttcgatacacattgatgatgtatttgcatgtactgttgaattcatagagcacgatgatatcgaaccatgctctgttgcagaatgtcaacaaagagcagattggcccaaatggaaagaagcaatccaggtagaactagattctctggcaaagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

20.24

Weight (kDa)

5.33

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 422
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 1 cut(s) 415
AfeI AGCGCT 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 317, 422
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 2 cut(s) 161, 485
ApeKI GCWGC 2 cut(s) 53, 101
ApoI RAATTY 1 cut(s) 422
AseI ATTAAT 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 40, 88
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 2 cut(s) 326, 518
BfoI RGCGCY 1 cut(s) 102
BglII AGATCT 1 cut(s) 380
BisI GCNGC 2 cut(s) 54, 102
BlsI GCNGC 2 cut(s) 55, 103
Bme1390I CCNGG 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 509
BplI GAGNNNNNCTC 4 cut(s) 233, 265, 248, 280
BpmI CTGGAG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 40, 88
BshFI GGCC 2 cut(s) 163, 487
BsiHKAI GWGCWC 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 2 cut(s) 163, 487
Bsp1286I GDGCHC 2 cut(s) 96, 435
Bsp143I GATC 3 cut(s) 38, 220, 380
BspANI GGCC 2 cut(s) 163, 487
BspHI TCATGA 1 cut(s) 253
BspPI GGATC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 3 cut(s) 38, 220, 380
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 359, 418
Bst6I CTCTTC 2 cut(s) 146, 191
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 3 cut(s) 41, 223, 383
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 3 cut(s) 38, 220, 380
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 40, 88
BstX2I RGATCY 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 2 cut(s) 163, 487
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 486
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 414
CviAII CATG 5 cut(s) 167, 254, 284, 411, 450
CviJI RGCY 5 cut(s) 53, 134, 140, 163, 487
CviKI_1 RGCY 5 cut(s) 53, 134, 140, 163, 487
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 40, 222, 382
DpnII GATC 3 cut(s) 38, 220, 380
DraIII CACNNNGTG 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 146, 191
EarI CTCTTC 2 cut(s) 146, 191
Eco130I CCWWGG 1 cut(s) 188
Eco32I GATATC 2 cut(s) 22, 442
Eco47III AGCGCT 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 2 cut(s) 22, 442
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 5 cut(s) 170, 257, 287, 414, 453
FatI CATG 5 cut(s) 166, 253, 283, 410, 449
Fnu4HI GCNGC 2 cut(s) 54, 102
Fsp4HI GCNGC 2 cut(s) 54, 102
FspBI CTAG 2 cut(s) 326, 518
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 54, 102
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 2 cut(s) 163, 487
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 101
Hin1II CATG 5 cut(s) 170, 257, 287, 414, 453
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HinfI GANTC 5 cut(s) 175, 244, 287, 322, 521
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 2 cut(s) 268, 309
Hpy188III TCNNGA 2 cut(s) 254, 326
Hpy8I GTNNAC 1 cut(s) 470
HpyCH4III ACNGT 2 cut(s) 359, 418
HpyCH4V TGCA 5 cut(s) 56, 68, 104, 410, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 5 cut(s) 170, 257, 287, 414, 453
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 38, 220, 380
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 18, 63, 78, 281, 494, 512, 521
Lsp1109I GCAGC 2 cut(s) 40, 88
MaeI CTAG 2 cut(s) 326, 518
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 40, 222, 382
MboI GATC 3 cut(s) 38, 220, 380
MboII GAAGA 4 cut(s) 163, 205, 208, 375
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 2 cut(s) 96, 435
MluCI AATT 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 7 cut(s) 113, 124, 147, 153, 192, 259, 292
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 3 cut(s) 38, 220, 380
NlaIII CATG 5 cut(s) 170, 257, 287, 414, 453
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 414
PagI TCATGA 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 5 cut(s) 175, 244, 287, 322, 521
PkrI GCNGC 2 cut(s) 55, 103
PshBI ATTAAT 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspPI GGNCC 1 cut(s) 486
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 2 cut(s) 54, 102
Sau3AI GATC 3 cut(s) 38, 220, 380
Sau96I GGNCC 1 cut(s) 486
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 96, 435
SetI ASST 4 cut(s) 55, 74, 124, 513
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 1 cut(s) 422
SspMI CTAG 2 cut(s) 326, 518
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 359, 418
TaqI TCGA 2 cut(s) 386, 444
TasI AATT 1 cut(s) 422
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 5 cut(s) 175, 244, 287, 322, 521
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 53, 101
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 300, 415
TspRI CASTG 1 cut(s) 364
VspI ATTAAT 1 cut(s) 227
XapI RAATTY 1 cut(s) 422
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 2 cut(s) 326, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.