Rmu_sc0002672.1_g000001

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002672.1
OG0000161
Physical Location & Seq
Reverse (-)
297 .. 1097
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002672.1_g000001.1.cds

Sequence Viewer

Length: 801 bp
atgagtcctcagagacgattaagtatttatgttggataccaatccccaacaattatccgctatttggaacccttgacaggcgatctctttaccgctagatttgcggactatcactttgatgagacagtcttccagtcgttagggggagataggaaaaaggattttccaaaggaacgacatgaattgtcgtggtttatcctcactctatctcattttgatccccgcacttcacaatgtgaaagtgaagtgaaaggaataatcgatcctcagaacatagcagattcgatacctgatatgtttactgatattgcaaaagtgatgagatcacatatactagctgcaaatgtgcctgcaaggttagaagtccccaacaaggggcacggtgccgcagatagaggcactgtaaccacacttagtggaggtgtggttgaggccatggctccccaaaggaagagggggaggccacttggttcgattgacactcacccaaggaaaaagagggtgagtaaggcacaaaccaatctattaatcatcaatgtagagaatccctctcatgagattgtctttgactatagttatgtccatgaatcaatactggaggacgccccgatgtttgaaatgattccagagaacaaagaaatctcaatagactatgagagtgcgtatgagttgatagaaagatcttccatacacattgatgatgtatttgcatacactattgctcaagaaatcatagagcacgatgatatcaaaccacgctctgttgcaaaatgtcaacaaaaagcagattggcctaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

266

Amino Acids

30.27

Weight (kDa)

5.7

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AciI CCGC 5 cut(s) 58, 93, 104, 223, 387
AclWI GGATC 2 cut(s) 212, 257
AcyI GRCGYC 1 cut(s) 603
AdeI CACNNNGTG 2 cut(s) 236, 416
AfiI CCNNNNNNNGG 5 cut(s) 64, 77, 373, 374, 375
AgsI TTSAA 1 cut(s) 617
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 2 cut(s) 7, 116
AlwI GGATC 2 cut(s) 212, 257
AoxI GGCC 3 cut(s) 432, 461, 791
ApeKI GCWGC 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 621
AsuHPI GGTGA 2 cut(s) 476, 514
BaeGI GKGCMC 1 cut(s) 381
BanI GGYRCC 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 325
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 7, 116
BfaI CTAG 2 cut(s) 96, 335
BfmI CTRYAG 1 cut(s) 571
BfuI GTATCC 1 cut(s) 29
BglII AGATCT 1 cut(s) 680
BisI GCNGC 2 cut(s) 339, 387
BlsI GCNGC 2 cut(s) 340, 388
BmiI GGNNCC 3 cut(s) 69, 385, 441
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 708
Bsa29I ATCGAT 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 435, 488
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 77, 373, 374, 375
Bse1I ACTGG 2 cut(s) 133, 600
Bse8I GATNNNNATC 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 435, 488
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 5 cut(s) 64, 77, 373, 374, 375
BseMII CTCAG 2 cut(s) 23, 281
BseNI ACTGG 2 cut(s) 133, 600
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 3 cut(s) 434, 463, 793
BshNI GGYRCC 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 741
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 5 cut(s) 64, 77, 373, 374, 375
BsmAI GTCTC 2 cut(s) 7, 116
BsmBI CGTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 3 cut(s) 434, 463, 793
Bsp1286I GDGCHC 2 cut(s) 381, 741
Bsp143I GATC 5 cut(s) 82, 217, 262, 323, 680
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 5 cut(s) 58, 93, 104, 223, 387
BspANI GGCC 3 cut(s) 434, 463, 793
BspCNI CTCAG 2 cut(s) 22, 280
BspDI ATCGAT 1 cut(s) 261
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 3 cut(s) 69, 385, 441
BspPI GGATC 2 cut(s) 212, 257
BspT107I GGYRCC 1 cut(s) 383
BsrI ACTGG 2 cut(s) 133, 600
BssECI CCNNGG 2 cut(s) 435, 488
BssMI GATC 5 cut(s) 82, 217, 262, 323, 680
BssNI GRCGYC 1 cut(s) 603
BssT1I CCWWGG 2 cut(s) 435, 488
Bst4CI ACNGT 3 cut(s) 127, 383, 403
Bst6I CTCTTC 1 cut(s) 446
BstACI GRCGYC 1 cut(s) 603
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 3 cut(s) 9, 267, 413
BstDSI CCRYGG 1 cut(s) 435
BstKTI GATC 5 cut(s) 85, 220, 265, 326, 683
BstMAI GTCTC 2 cut(s) 7, 116
BstMBI GATC 5 cut(s) 82, 217, 262, 323, 680
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 571
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 680
BstYI RGATCY 1 cut(s) 680
Bsu15I ATCGAT 1 cut(s) 261
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 3 cut(s) 434, 463, 793
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 351
CciI TCATGA 1 cut(s) 553
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 1 cut(s) 611
CviAII CATG 4 cut(s) 179, 436, 554, 584
CviJI RGCY 5 cut(s) 338, 434, 440, 463, 793
CviKI_1 RGCY 5 cut(s) 338, 434, 440, 463, 793
DdeI CTNAG 3 cut(s) 9, 267, 413
DpnI GATC 5 cut(s) 84, 219, 264, 325, 682
DpnII GATC 5 cut(s) 82, 217, 262, 323, 680
DraIII CACNNNGTG 2 cut(s) 236, 416
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco130I CCWWGG 2 cut(s) 435, 488
Eco32I GATATC 1 cut(s) 748
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 435, 488
ErhI CCWWGG 2 cut(s) 435, 488
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 4 cut(s) 182, 439, 557, 587
FaqI GGGAC 1 cut(s) 350
FatI CATG 4 cut(s) 178, 435, 553, 583
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 339, 387
Fsp4HI GCNGC 2 cut(s) 339, 387
FspBI CTAG 2 cut(s) 96, 335
GluI GCNGC 2 cut(s) 339, 387
GsuI CTGGAG 1 cut(s) 617
HaeIII GGCC 3 cut(s) 434, 463, 793
HgaI GACGC 1 cut(s) 611
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 4 cut(s) 182, 439, 557, 587
HincII GTYRAC 1 cut(s) 776
HindII GTYRAC 1 cut(s) 776
HinfI GANTC 5 cut(s) 4, 281, 544, 587, 622
HphI GGTGA 2 cut(s) 476, 514
Hpy166II GTNNAC 2 cut(s) 300, 776
Hpy188I TCNGA 2 cut(s) 12, 270
Hpy188III TCNNGA 3 cut(s) 554, 626, 725
Hpy8I GTNNAC 2 cut(s) 300, 776
HpyCH4III ACNGT 3 cut(s) 127, 383, 403
HpyCH4V TGCA 5 cut(s) 311, 341, 353, 710, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 3 cut(s) 9, 267, 413
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 4 cut(s) 182, 439, 557, 587
Kzo9I GATC 5 cut(s) 82, 217, 262, 323, 680
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 6 cut(s) 63, 146, 303, 363, 581, 639
Lsp1109I GCAGC 1 cut(s) 325
MaeI CTAG 2 cut(s) 96, 335
MaeIII GTNAC 1 cut(s) 403
MalI GATC 5 cut(s) 84, 219, 264, 325, 682
MboI GATC 5 cut(s) 82, 217, 262, 323, 680
MboII GAAGA 3 cut(s) 121, 463, 675
MflI RGATCY 1 cut(s) 680
MhlI GDGCHC 2 cut(s) 381, 741
MluCI AATT 2 cut(s) 51, 182
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 2 cut(s) 20, 527
MslI CAYNNNNRTG 2 cut(s) 117, 696
MwoI GCNNNNNNNGC 1 cut(s) 101
NcoI CCATGG 1 cut(s) 435
NdeII GATC 5 cut(s) 82, 217, 262, 323, 680
NlaIII CATG 4 cut(s) 182, 439, 557, 587
NlaIV GGNNCC 3 cut(s) 69, 385, 441
PagI TCATGA 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 4 cut(s) 281, 544, 587, 622
PkrI GCNGC 2 cut(s) 340, 388
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 527
PspN4I GGNNCC 3 cut(s) 69, 385, 441
PsuI RGATCY 1 cut(s) 680
RseI CAYNNNNRTG 2 cut(s) 117, 696
SaqAI TTAA 2 cut(s) 20, 527
SatI GCNGC 2 cut(s) 339, 387
Sau3AI GATC 5 cut(s) 82, 217, 262, 323, 680
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 381, 741
SetI ASST 4 cut(s) 292, 340, 359, 424
SfcI CTRYAG 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 117, 696
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 2 cut(s) 51, 182
SsiI CCGC 5 cut(s) 58, 93, 104, 223, 387
SspMI CTAG 2 cut(s) 96, 335
StyI CCWWGG 2 cut(s) 435, 488
TaaI ACNGT 3 cut(s) 127, 383, 403
TaqI TCGA 3 cut(s) 261, 284, 473
TasI AATT 2 cut(s) 51, 182
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 4 cut(s) 281, 544, 587, 622
Tru1I TTAA 2 cut(s) 20, 527
Tru9I TTAA 2 cut(s) 20, 527
TscAI CASTG 1 cut(s) 406
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 195, 600
TspRI CASTG 1 cut(s) 406
VspI ATTAAT 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 96, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.