Rmu_sc0012945.1_g000001

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012945.1
OG0000161
Physical Location & Seq
Forward (+)
7012 .. 10650
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012945.1_g000001.1.cds

Sequence Viewer

Length: 888 bp
atgctcacctccaactcatttcaagtactgttcacgaagttgaaagggagcagaactgaagtggtggcttttggcattttggagctggtcaacttctgtcctctaagcgccatgcttgatggtgacaccacttgtgacatcatcacctccaatttttcttctaacagtgtttctgacgccccgaccctaccaaaatcctcattgaaggtagctgatactttacctgatgagttttctgaccttgctaaagtgacgagattacatatagctattgcaaatgtgcctacaaggatagacgtcccgactacaagacgtagcaccacccttgaagcaccacgggatgacgccactgcccctaagatctctgtaaactacacttgtgtacatcagaagtgggagagaaactccgtcatccttaatgacatattcgcgtactccgttgctcgtgagattattgagcctgatgacgtcgaacctcgctgtgttgatgaatgccaacgtagagtagattggccaaaatggaaaaatgtgatccaggaaaaattagattctctagcgaagaaggtatttgggcccgttgtgccagcattacctaacacaaacctgttggacataaatggtcttgaccctaaaaatgatccatttcgtcccaagaatgatggcgaagaagtgctagaggcagaagtgctctatctatgtgcaataggtgcattattgggtaagatagatatgagcttcttctatccctacaaagaaaagatgaaggatgataatgatggattcagacccatcatgtaccaaaaccgcagccgccaccgcatctactgtcgacaggcgccatctttcccctcctcaaaacataaatggtgttttggaaggttttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

295

Amino Acids

33.37

Weight (kDa)

6.45

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 300, 471
AccB1I GGYRCC 1 cut(s) 835
AccI GTMKAC 1 cut(s) 829
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 805, 811, 817
AclWI GGATC 2 cut(s) 526, 632
AcoI YGGCCR 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 5 cut(s) 177, 297, 345, 468, 836
AfaI GTAC 4 cut(s) 27, 384, 434, 797
AgsI TTSAA 4 cut(s) 23, 43, 205, 329
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 4 cut(s) 85, 212, 269, 735
AluI AGCT 4 cut(s) 85, 212, 269, 735
Alw21I GWGCWC 1 cut(s) 690
AlwI GGATC 2 cut(s) 526, 632
AoxI GGCC 2 cut(s) 512, 572
ApaI GGGCCC 1 cut(s) 576
ApeKI GCWGC 1 cut(s) 807
AspLEI GCGC 2 cut(s) 110, 838
AspS9I GGNCC 2 cut(s) 572, 573
AsuHPI GGTGA 2 cut(s) 134, 136
BaeGI GKGCMC 1 cut(s) 576
BalI TGGCCA 1 cut(s) 514
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 1 cut(s) 576
BauI CACGAG 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 819
BccI CCATC 5 cut(s) 113, 653, 770, 797, 847
BciT130I CCWGG 1 cut(s) 536
BfaI CTAG 2 cut(s) 554, 674
BfoI RGCGCY 2 cut(s) 111, 839
BglII AGATCT 1 cut(s) 360
BisI GCNGC 2 cut(s) 808, 811
BlsI GCNGC 2 cut(s) 809, 812
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 536
BmgT120I GGNCC 2 cut(s) 572, 573
BmiI GGNNCC 2 cut(s) 574, 837
BmrFI CCNGG 1 cut(s) 536
BmsI GCATC 1 cut(s) 828
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BsaHI GRCGYC 5 cut(s) 177, 297, 345, 468, 836
BsaJI CCNNGG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 3 cut(s) 346, 411, 772
BseRI GAGGAG 1 cut(s) 841
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 2 cut(s) 514, 574
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 690
BslFI GGGAC 2 cut(s) 284, 633
BsmFI GGGAC 2 cut(s) 284, 633
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 2 cut(s) 514, 574
Bsp120I GGGCCC 1 cut(s) 572
Bsp1286I GDGCHC 2 cut(s) 576, 690
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 3 cut(s) 360, 531, 637
BspACI CCGC 3 cut(s) 805, 811, 817
BspANI GGCC 2 cut(s) 514, 574
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 2 cut(s) 574, 837
BspPI GGATC 2 cut(s) 526, 632
BspT107I GGYRCC 1 cut(s) 835
BsrGI TGTACA 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 3 cut(s) 360, 531, 637
BssNI GRCGYC 5 cut(s) 177, 297, 345, 468, 836
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 3 cut(s) 30, 167, 827
BstACI GRCGYC 5 cut(s) 177, 297, 345, 468, 836
BstAPI GCANNNNNTGC 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 2 cut(s) 104, 357
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 3 cut(s) 346, 411, 772
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 2 cut(s) 111, 839
BstHHI GCGC 2 cut(s) 110, 838
BstKTI GATC 3 cut(s) 363, 534, 640
BstMBI GATC 3 cut(s) 360, 531, 637
BstMWI GCNNNNNNNGC 3 cut(s) 580, 707, 816
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 576
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 819
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 2 cut(s) 514, 574
BtgI CCRYGG 1 cut(s) 335
BtsCI GGATG 3 cut(s) 346, 411, 772
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 172, 348
Cac8I GCNNGC 1 cut(s) 585
CfoI GCGC 2 cut(s) 110, 838
Cfr13I GGNCC 2 cut(s) 572, 573
CseI GACGC 2 cut(s) 185, 353
Csp6I GTAC 4 cut(s) 26, 383, 433, 796
CviAII CATG 2 cut(s) 112, 793
CviJI RGCY 9 cut(s) 68, 85, 212, 269, 460, 514, 574, 735, 810
CviKI_1 RGCY 9 cut(s) 68, 85, 212, 269, 460, 514, 574, 735, 810
CviQI GTAC 4 cut(s) 26, 383, 433, 796
DdeI CTNAG 2 cut(s) 104, 357
DinI GGCGCC 1 cut(s) 837
DpnI GATC 3 cut(s) 362, 533, 639
DpnII GATC 3 cut(s) 360, 531, 637
EaeI YGGCCR 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 576
EgeI GGCGCC 1 cut(s) 837
EheI GGCGCC 1 cut(s) 837
FaeI CATG 2 cut(s) 115, 796
FaiI YATR 9 cut(s) 113, 264, 266, 425, 614, 697, 731, 794, 861
FaqI GGGAC 2 cut(s) 284, 633
FatI CATG 2 cut(s) 111, 792
FblI GTMKAC 1 cut(s) 829
Fnu4HI GCNGC 2 cut(s) 808, 811
FokI GGATG 3 cut(s) 353, 398, 779
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 2 cut(s) 808, 811
FspBI CTAG 2 cut(s) 554, 674
GlaI GCGC 2 cut(s) 109, 837
GluI GCNGC 2 cut(s) 808, 811
HaeII RGCGCY 2 cut(s) 111, 839
HaeIII GGCC 2 cut(s) 514, 574
HgaI GACGC 2 cut(s) 185, 353
HhaI GCGC 2 cut(s) 110, 838
Hin1I GRCGYC 5 cut(s) 177, 297, 345, 468, 836
Hin1II CATG 2 cut(s) 115, 796
Hin6I GCGC 2 cut(s) 108, 836
HinP1I GCGC 2 cut(s) 108, 836
HincII GTYRAC 2 cut(s) 91, 830
HindII GTYRAC 2 cut(s) 91, 830
HinfI GANTC 2 cut(s) 548, 780
HphI GGTGA 2 cut(s) 134, 136
Hpy166II GTNNAC 5 cut(s) 33, 91, 370, 383, 830
Hpy188I TCNGA 4 cut(s) 175, 238, 390, 785
Hpy188III TCNNGA 4 cut(s) 34, 301, 446, 623
Hpy8I GTNNAC 5 cut(s) 33, 91, 370, 383, 830
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 4 cut(s) 199, 556, 757, 870
HpyCH4III ACNGT 3 cut(s) 30, 167, 827
HpyCH4IV ACGT 4 cut(s) 297, 313, 468, 499
HpyCH4V TGCA 3 cut(s) 275, 701, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 580, 707, 816
HpyF3I CTNAG 2 cut(s) 104, 357
HpySE526I ACGT 4 cut(s) 297, 313, 468, 499
Hsp92I GRCGYC 5 cut(s) 177, 297, 345, 468, 836
Hsp92II CATG 2 cut(s) 115, 796
HspAI GCGC 2 cut(s) 108, 836
KasI GGCGCC 1 cut(s) 835
Kzo9I GATC 3 cut(s) 360, 531, 637
LmnI GCTCC 2 cut(s) 48, 82
LpnPI CCDG 8 cut(s) 71, 237, 474, 521, 548, 597, 617, 818
Lsp1109I GCAGC 1 cut(s) 819
LweI GCATC 1 cut(s) 828
MaeI CTAG 2 cut(s) 554, 674
MaeII ACGT 4 cut(s) 297, 313, 468, 499
MaeIII GTNAC 3 cut(s) 122, 134, 250
MalI GATC 3 cut(s) 362, 533, 639
MboI GATC 3 cut(s) 360, 531, 637
MboII GAAGA 4 cut(s) 150, 571, 677, 730
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 2 cut(s) 576, 690
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 2 cut(s) 151, 542
MluNI TGGCCA 1 cut(s) 514
Mly113I GGCGCC 1 cut(s) 836
MmeI TCCRAC 2 cut(s) 36, 588
MnlI CCTC 8 cut(s) 19, 111, 157, 208, 486, 670, 859, 862
Mox20I TGGCCA 1 cut(s) 514
MscI TGGCCA 1 cut(s) 514
MseI TTAA 2 cut(s) 417, 886
Msp20I TGGCCA 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 536
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 1 cut(s) 536
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 580, 707, 816
NarI GGCGCC 1 cut(s) 836
NdeII GATC 3 cut(s) 360, 531, 637
NlaIII CATG 2 cut(s) 115, 796
NlaIV GGNNCC 2 cut(s) 574, 837
NmuCI GTSAC 3 cut(s) 122, 134, 250
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 2 cut(s) 548, 780
PfoI TCCNGGA 1 cut(s) 534
PkrI GCNGC 2 cut(s) 809, 812
PluTI GGCGCC 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 2 cut(s) 574, 837
PspOMI GGGCCC 1 cut(s) 572
PspPI GGNCC 2 cut(s) 572, 573
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 4 cut(s) 27, 384, 434, 797
RsaNI GTAC 4 cut(s) 26, 383, 433, 796
SalI GTCGAC 1 cut(s) 828
SaqAI TTAA 2 cut(s) 417, 886
SatI GCNGC 2 cut(s) 808, 811
Sau3AI GATC 3 cut(s) 360, 531, 637
Sau96I GGNCC 2 cut(s) 572, 573
ScaI AGTACT 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 2 cut(s) 576, 690
SfaNI GCATC 1 cut(s) 828
SfoI GGCGCC 1 cut(s) 837
Sse9I AATT 2 cut(s) 151, 542
SsiI CCGC 3 cut(s) 805, 811, 817
SspDI GGCGCC 1 cut(s) 835
SspMI CTAG 2 cut(s) 554, 674
StyD4I CCNGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 30, 167, 827
TaiI ACGT 4 cut(s) 300, 316, 471, 502
TaqI TCGA 2 cut(s) 471, 829
TasI AATT 2 cut(s) 151, 542
TatI WGTACW 2 cut(s) 25, 382
TauI GCSGC 1 cut(s) 813
TfiI GAWTC 2 cut(s) 548, 780
Tru1I TTAA 2 cut(s) 417, 886
Tru9I TTAA 2 cut(s) 417, 886
TscAI CASTG 2 cut(s) 172, 355
TseFI GTSAC 3 cut(s) 122, 134, 250
TseI GCWGC 1 cut(s) 807
Tsp45I GTSAC 3 cut(s) 122, 134, 250
TspDTI ATGAA 2 cut(s) 504, 776
TspGWI ACGGA 2 cut(s) 397, 427
TspRI CASTG 2 cut(s) 172, 355
XmiI GTMKAC 1 cut(s) 829
XspI CTAG 2 cut(s) 554, 674
ZraI GACGTC 2 cut(s) 298, 469
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.