Rmu_sc0002207.1_g000015

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002207.1
Physical Location & Seq
Forward (+)
50211 .. 50738
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002207.1_g000015.1.cds

Sequence Viewer

Length: 528 bp
atgggtcctcagagacgattaattatttatgttggatacgaatctccaacgattatccgctttttggaacccttgacaggcaatctctttaaagctagatttgcggactgtcactttgatgagacagtcttcccgtcattagggggagataggaaaaaggattttccaagggaacgacaggaattgtcgtggtttgtccccactctgtctcattttgatctccgcacttcacaaagtgaaagtgaagtgaaaagaataatcgatcttcggaacatagcagattcgatgcctgatatgtttactgatatcgtaaaagtgatgagatcacatataccagctgcaaatgtgcctgcaaggttagaagtccccaacaaggggcacggtgccgcagatagaggcactgcaaccgcacttattggaggtgtggttgaggccgtggctccccaaggaagagggggaggccacttggttcgattgacactcaccagggttagaagttcccaacaaggggcacggtgccgcggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

19.43

Weight (kDa)

9.81

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 383, 516
AccII CGCG 1 cut(s) 522
AciI CCGC 7 cut(s) 58, 104, 223, 387, 408, 520, 522
AdeI CACNNNGTG 1 cut(s) 236
AfiI CCNNNNNNNGG 8 cut(s) 64, 77, 140, 373, 374, 375, 507, 508
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 2 cut(s) 95, 338
AluI AGCT 2 cut(s) 95, 338
Alw26I GTCTC 3 cut(s) 7, 116, 213
AoxI GGCC 2 cut(s) 432, 460
ApeKI GCWGC 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 475
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 2 cut(s) 381, 514
BanI GGYRCC 2 cut(s) 383, 516
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 487
BciVI GTATCC 1 cut(s) 29
BcoDI GTCTC 3 cut(s) 7, 116, 213
BfaI CTAG 1 cut(s) 96
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 3 cut(s) 339, 387, 520
BlsI GCNGC 3 cut(s) 340, 388, 521
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 5 cut(s) 6, 69, 385, 441, 518
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 121
Bsa29I ATCGAT 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 5 cut(s) 167, 435, 445, 486, 520
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 77, 140, 373, 374, 375, 507, 508
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 1 cut(s) 487
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 5 cut(s) 167, 435, 445, 486, 520
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 8 cut(s) 64, 77, 140, 373, 374, 375, 507, 508
BseMII CTCAG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 381, 514
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 2 cut(s) 434, 462
BshNI GGYRCC 2 cut(s) 383, 516
BshVI ATCGAT 1 cut(s) 261
BslFI GGGAC 2 cut(s) 182, 350
BslI CCNNNNNNNGG 8 cut(s) 64, 77, 140, 373, 374, 375, 507, 508
BsmAI GTCTC 3 cut(s) 7, 116, 213
BsmBI CGTCTC 1 cut(s) 7
BsmFI GGGAC 2 cut(s) 182, 350
BsnI GGCC 2 cut(s) 434, 462
Bsp1286I GDGCHC 2 cut(s) 381, 514
Bsp143I GATC 3 cut(s) 217, 262, 323
BspACI CCGC 7 cut(s) 58, 104, 223, 387, 408, 520, 522
BspANI GGCC 2 cut(s) 434, 462
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 261
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 5 cut(s) 6, 69, 385, 441, 518
BspT107I GGYRCC 2 cut(s) 383, 516
BssECI CCNNGG 5 cut(s) 167, 435, 445, 486, 520
BssMI GATC 3 cut(s) 217, 262, 323
BssT1I CCWWGG 2 cut(s) 167, 445
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 4 cut(s) 110, 127, 383, 516
Bst6I CTCTTC 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 2 cut(s) 435, 520
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 3 cut(s) 220, 265, 326
BstMAI GTCTC 3 cut(s) 7, 116, 213
BstMBI GATC 3 cut(s) 217, 262, 323
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 485
BstSLI GKGCMC 2 cut(s) 381, 514
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 261
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 434, 462
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 2 cut(s) 435, 520
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 5
Cfr42I CCGCGG 1 cut(s) 523
ClaI ATCGAT 1 cut(s) 261
CviJI RGCY 5 cut(s) 95, 338, 434, 440, 462
CviKI_1 RGCY 5 cut(s) 95, 338, 434, 440, 462
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 219, 264, 325
DpnII GATC 3 cut(s) 217, 262, 323
DraI TTTAAA 1 cut(s) 91
DraIII CACNNNGTG 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 167, 445
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 485
EcoRV GATATC 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 167, 445
ErhI CCWWGG 2 cut(s) 167, 445
Esp3I CGTCTC 1 cut(s) 7
FaiI YATR 5 cut(s) 30, 275, 296, 330, 332
FaqI GGGAC 2 cut(s) 182, 350
Fnu4HI GCNGC 3 cut(s) 339, 387, 520
Fsp4HI GCNGC 3 cut(s) 339, 387, 520
FspBI CTAG 1 cut(s) 96
GluI GCNGC 3 cut(s) 339, 387, 520
HaeIII GGCC 2 cut(s) 434, 462
HinfI GANTC 2 cut(s) 41, 281
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 2 cut(s) 12, 270
Hpy8I GTNNAC 1 cut(s) 300
HpyCH4III ACNGT 4 cut(s) 110, 127, 383, 516
HpyCH4V TGCA 3 cut(s) 341, 353, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 9
KspI CCGCGG 1 cut(s) 523
Kzo9I GATC 3 cut(s) 217, 262, 323
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 7 cut(s) 63, 164, 303, 348, 363, 472, 499
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 219, 264, 325
MboI GATC 3 cut(s) 217, 262, 323
MboII GAAGA 3 cut(s) 121, 257, 462
MhlI GDGCHC 2 cut(s) 381, 514
MluCI AATT 2 cut(s) 21, 182
MmeI TCCRAC 2 cut(s) 13, 71
MnlI CCTC 6 cut(s) 18, 389, 413, 424, 446, 452
MseI TTAA 2 cut(s) 20, 90
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 338, 522
MspR9I CCNGG 1 cut(s) 487
MvaI CCWGG 1 cut(s) 487
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 3 cut(s) 217, 262, 323
NlaIV GGNNCC 5 cut(s) 6, 69, 385, 441, 518
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 41, 281
PkrI GCNGC 3 cut(s) 340, 388, 521
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 5 cut(s) 6, 69, 385, 441, 518
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 117
SacII CCGCGG 1 cut(s) 523
SaqAI TTAA 2 cut(s) 20, 90
SatI GCNGC 3 cut(s) 339, 387, 520
Sau3AI GATC 3 cut(s) 217, 262, 323
Sau96I GGNCC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 2 cut(s) 381, 514
SetI ASST 4 cut(s) 97, 340, 359, 424
SfaNI GCATC 1 cut(s) 276
Sfr303I CCGCGG 1 cut(s) 523
SgrBI CCGCGG 1 cut(s) 523
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 2 cut(s) 21, 182
SsiI CCGC 7 cut(s) 58, 104, 223, 387, 408, 520, 522
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 2 cut(s) 167, 445
TaaI ACNGT 4 cut(s) 110, 127, 383, 516
TaqI TCGA 3 cut(s) 261, 284, 472
TasI AATT 2 cut(s) 21, 182
TauI GCSGC 2 cut(s) 389, 522
TfiI GAWTC 2 cut(s) 41, 281
Tru1I TTAA 2 cut(s) 20, 90
Tru9I TTAA 2 cut(s) 20, 90
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 110
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 20
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.