Rmu_sc0001336.1_g000036

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001336.1
Physical Location & Seq
Forward (+)
114782 .. 115396
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001336.1_g000036.1.cds

Sequence Viewer

Length: 615 bp
atgggtcctcagagacgattaagtatttatgttggatacgaacccctaacaattatccgctatttggaacccttgacaggcgatctctctacctctagatttgtggattgtcactttgatgagacagtcttccgggcgttagggggagataggaaaaaggattttccaagggaacgacaggaattatcgtggtttgtcctccctctgtctcattttgatccccgcacttcacaatgtgaaagtgaagtgaaaagaataatcgatcttcagaacgtagcagattcgatgcctgatgcgtttactgatattgcaaaagtgacaagatcacatataccagctgtaaatgtgcctgcaaggttagaagccccaacaaggggcacggtgctgcagatggaggcactgcaaccacacttagtggagttgtggttgaggccgtggctccccaaaggaagagaaggaggccacttggttcaattgacatacacccaaggaaaaagagggcgagtaaggcacaaaccaatcatcaatgtatataatccctctcatgagattgtctctgattatagttatatccatgaatcaatactggtgatgcagctcatagcaagcgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

23.4

Weight (kDa)

7.86

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 58, 223
AclWI GGATC 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 251
AdeI CACNNNGTG 2 cut(s) 236, 415
AfiI CCNNNNNNNGG 5 cut(s) 64, 77, 372, 373, 374
AgsI TTSAA 1 cut(s) 473
AluBI AGCT 2 cut(s) 338, 598
AluI AGCT 2 cut(s) 338, 598
Alw26I GTCTC 4 cut(s) 7, 116, 213, 559
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 431, 460
ApeKI GCWGC 2 cut(s) 385, 595
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 601
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 372, 607
BccI CCATC 1 cut(s) 385
BceAI ACGGC 1 cut(s) 418
BciVI GTATCC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 4 cut(s) 7, 116, 213, 559
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 386
BfuI GTATCC 1 cut(s) 29
BisI GCNGC 2 cut(s) 386, 596
BlsI GCNGC 2 cut(s) 387, 597
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 69, 440
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 3 cut(s) 276, 283, 582
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpuMI CCSGG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 167, 434, 487
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 77, 372, 373, 374
Bse1I ACTGG 1 cut(s) 591
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 167, 434, 487
BseLI CCNNNNNNNGG 5 cut(s) 64, 77, 372, 373, 374
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 2 cut(s) 372, 607
BshFI GGCC 2 cut(s) 433, 462
BshVI ATCGAT 1 cut(s) 261
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 5 cut(s) 64, 77, 372, 373, 374
BsmAI GTCTC 4 cut(s) 7, 116, 213, 559
BsmBI CGTCTC 1 cut(s) 7
BsnI GGCC 2 cut(s) 433, 462
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 4 cut(s) 82, 217, 262, 323
BspACI CCGC 2 cut(s) 58, 223
BspANI GGCC 2 cut(s) 433, 462
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 261
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 3 cut(s) 6, 69, 440
BspMAI CTGCAG 1 cut(s) 390
BspPI GGATC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 3 cut(s) 167, 434, 487
BssMI GATC 4 cut(s) 82, 217, 262, 323
BssT1I CCWWGG 2 cut(s) 167, 487
Bst4CI ACNGT 2 cut(s) 127, 382
Bst6I CTCTTC 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 351, 607
BstDEI CTNAG 2 cut(s) 9, 412
BstDSI CCRYGG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 4 cut(s) 85, 220, 265, 326
BstMAI GTCTC 4 cut(s) 7, 116, 213, 559
BstMBI GATC 4 cut(s) 82, 217, 262, 323
BstMWI GCNNNNNNNGC 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 386
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 372, 607
BstV2I GAAGAC 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 261
BsuI GTATCC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 433, 462
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 434
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 2 cut(s) 351, 607
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 611
Cfr13I GGNCC 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 261
CviAII CATG 2 cut(s) 545, 575
CviJI RGCY 6 cut(s) 338, 365, 433, 439, 462, 598
CviKI_1 RGCY 6 cut(s) 338, 365, 433, 439, 462, 598
DdeI CTNAG 2 cut(s) 9, 412
DpnI GATC 4 cut(s) 84, 219, 264, 325
DpnII GATC 4 cut(s) 82, 217, 262, 323
DraIII CACNNNGTG 2 cut(s) 236, 415
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 167, 487
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 5
EcoT14I CCWWGG 2 cut(s) 167, 487
ErhI CCWWGG 2 cut(s) 167, 487
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 2 cut(s) 548, 578
FatI CATG 2 cut(s) 544, 574
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 386, 596
Fsp4HI GCNGC 2 cut(s) 386, 596
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 610
GluI GCNGC 2 cut(s) 386, 596
HaeIII GGCC 2 cut(s) 433, 462
HapII CCGG 1 cut(s) 133
HhaI GCGC 1 cut(s) 611
Hin1II CATG 2 cut(s) 548, 578
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HinfI GANTC 2 cut(s) 281, 578
HpaII CCGG 1 cut(s) 133
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 3 cut(s) 12, 270, 559
Hpy188III TCNNGA 2 cut(s) 96, 545
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 449
HpyCH4III ACNGT 2 cut(s) 127, 382
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 311, 353, 388, 403, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 508
HpyF3I CTNAG 2 cut(s) 9, 412
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 548, 578
HspAI GCGC 1 cut(s) 609
Kzo9I GATC 4 cut(s) 82, 217, 262, 323
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 7 cut(s) 63, 146, 164, 303, 348, 363, 572
Lsp1109I GCAGC 2 cut(s) 372, 607
LweI GCATC 3 cut(s) 276, 283, 582
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 110, 316
MalI GATC 4 cut(s) 84, 219, 264, 325
MboI GATC 4 cut(s) 82, 217, 262, 323
MboII GAAGA 3 cut(s) 121, 257, 462
MfeI CAATTG 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 3 cut(s) 51, 182, 473
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 9 cut(s) 18, 103, 209, 213, 388, 423, 452, 491, 550
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 134
MunI CAATTG 1 cut(s) 473
MwoI GCNNNNNNNGC 1 cut(s) 508
NciI CCSGG 1 cut(s) 134
NdeII GATC 4 cut(s) 82, 217, 262, 323
NlaIII CATG 2 cut(s) 548, 578
NlaIV GGNNCC 3 cut(s) 6, 69, 440
NmuCI GTSAC 2 cut(s) 110, 316
PagI TCATGA 1 cut(s) 544
PfeI GAWTC 2 cut(s) 281, 578
PkrI GCNGC 2 cut(s) 387, 597
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 6, 69, 440
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 390
PvuII CAGCTG 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 2 cut(s) 386, 596
Sau3AI GATC 4 cut(s) 82, 217, 262, 323
Sau96I GGNCC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 380
SetI ASST 5 cut(s) 95, 276, 340, 359, 600
SfaNI GCATC 3 cut(s) 276, 283, 582
SfcI CTRYAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 3 cut(s) 51, 182, 473
SsiI CCGC 2 cut(s) 58, 223
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 167, 487
TaaI ACNGT 2 cut(s) 127, 382
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 261, 284
TasI AATT 3 cut(s) 51, 182, 473
TfiI GAWTC 2 cut(s) 281, 578
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 2 cut(s) 110, 316
TseI GCWGC 2 cut(s) 385, 595
Tsp45I GTSAC 2 cut(s) 110, 316
TspDTI ATGAA 1 cut(s) 591
TspRI CASTG 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 5
XbaI TCTAGA 1 cut(s) 95
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.