Rmu_sc0007115.1_g000006

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007115.1
OG0000161
Physical Location & Seq
Forward (+)
18640 .. 19155
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007115.1_g000006.1.cds

Sequence Viewer

Length: 516 bp
ctgcaaccacacttagtggaggtgtggttgaggccgtggcctccccaagtggctccccagaggaagagggggaggccacttggttcaattgacactcacccaaggaagaagagggcgagtacggcccaaaccaatccattaatcatcaatgtagagaatccctatcatgagattgtctctgattatagttatgtccacgaatcaatactggaggacgctccgatgtttgaaatgattccagagaacaaagaaatctcaatagactatgagagtgcgtatgagttgatagaaagatcttccatacacattgatgatgtatttgcatacactgttgctcaaaaaatcatagagcacgatgatatcgaaccacgctttgttccagaatgtcaacaaagagcatattggcctaaatggaaagaagcaatccaggcagaattagattctctgacaaagagacaggtatttggtccagtagtgctaagcccaccaagtgtaaagcctataggacataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

171

Amino Acids

19.84

Weight (kDa)

5.81

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 2 cut(s) 16, 491
AfaI GTAC 1 cut(s) 121
AgsI TTSAA 2 cut(s) 87, 230
AjnI CCWGG 1 cut(s) 426
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 181, 448
AoxI GGCC 5 cut(s) 32, 38, 74, 123, 404
AseI ATTAAT 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 124, 467
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 354
BceAI ACGGC 2 cut(s) 19, 138
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 2 cut(s) 181, 448
BfmI CTRYAG 1 cut(s) 501
BglII AGATCT 1 cut(s) 293
BlpI GCTNAGC 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 124, 467
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 35, 101
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bse1I ACTGG 2 cut(s) 213, 470
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 35, 101
BseNI ACTGG 2 cut(s) 213, 470
BshFI GGCC 5 cut(s) 34, 40, 76, 125, 406
BsiHKAI GWGCWC 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 181, 448
BsnI GGCC 5 cut(s) 34, 40, 76, 125, 406
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 293
Bsp1720I GCTNAGC 1 cut(s) 479
BspANI GGCC 5 cut(s) 34, 40, 76, 125, 406
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 54
BsrI ACTGG 2 cut(s) 213, 470
BssECI CCNNGG 2 cut(s) 35, 101
BssMI GATC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 2 cut(s) 59, 104
BstDEI CTNAG 2 cut(s) 13, 479
BstDSI CCRYGG 1 cut(s) 35
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 2 cut(s) 181, 448
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 2 cut(s) 122, 428
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 5 cut(s) 34, 40, 76, 125, 406
BtgI CCRYGG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 327
CciI TCATGA 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 124, 467
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 167
CviJI RGCY 8 cut(s) 34, 40, 53, 76, 125, 406, 483, 499
CviKI_1 RGCY 8 cut(s) 34, 40, 53, 76, 125, 406, 483, 499
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 2 cut(s) 13, 479
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
DraIII CACNNNGTG 2 cut(s) 16, 491
Eam1104I CTCTTC 2 cut(s) 59, 104
EarI CTCTTC 2 cut(s) 59, 104
Eco130I CCWWGG 1 cut(s) 101
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 426
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 1 cut(s) 170
FatI CATG 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 5 cut(s) 34, 40, 76, 125, 406
HgaI GACGC 1 cut(s) 224
Hin1II CATG 1 cut(s) 170
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HinfI GANTC 4 cut(s) 157, 200, 235, 440
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 196, 389
Hpy188I TCNGA 3 cut(s) 181, 222, 447
Hpy188III TCNNGA 3 cut(s) 167, 239, 380
Hpy8I GTNNAC 2 cut(s) 196, 389
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 4, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 428
HpyF3I CTNAG 2 cut(s) 13, 479
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 2 cut(s) 58, 223
LpnPI CCDG 8 cut(s) 71, 194, 252, 393, 413, 440, 443, 483
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 4 cut(s) 76, 118, 121, 288
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 2 cut(s) 87, 434
MnlI CCTC 8 cut(s) 13, 24, 51, 54, 60, 66, 105, 205
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 122, 428
NdeII GATC 1 cut(s) 293
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 54
PagI TCATGA 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 157, 200, 235, 440
PshBI ATTAAT 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 124, 467
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 2 cut(s) 124, 467
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 354
SetI ASST 2 cut(s) 24, 462
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 2 cut(s) 87, 434
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 363
TasI AATT 2 cut(s) 87, 434
TfiI GAWTC 4 cut(s) 157, 200, 235, 440
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 334
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 467
VspI ATTAAT 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.