pycom17g17400

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15147942 .. 15149415
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
ATGCTGAATCCCCATCATTTTTGCAAAGAATTCAAGGGGATATTTACGGGCCTATTCAACCACCTTATGGACCATTTCGATATTTTATGGTTTTGGTTGATGTATCTACTTGATGATCACATGTTTGCCTCTTGTATACTCGAAATGTACATAGTTCCCAGATTACCCTTATTAAGTCAATCCGACTTAATAACAACACTAGGCATTGGTGTTGAACACCCTATTTCTCATGTCCATTCTCAAAATGGTTTAGCAGATGCATTTATCAAGCTGCTTCAGTTAATAGCTCGCGCTCTGCTCATGAAAACAAAATTCACTGGTTCAATTGAGACCTATAGCCAACCATCAACACTCCTCATTATGACTCGTATTTGGGGATCAGTCAAACATTTTACATTTATGAGTTTTTGGTTGTGCTGTTTATATCGCAGACTGGGAATTTATATGGTTTTTGATTCACCATCTATCATTAGATATTTGGAACCCTTGACATGTGATATTTTTTTAGCTTGTTTTGCAGATTGTCACTTTCATGAGACAGCTTTCCCGCCGTTAGGGAAGAAAAGACTGTTCCAGAAGATGAAAAGGATTATTCATCTTCAAAGTATTGCTAATCAAATGCTAGATGCACTTACCAATGCTACGAAAGTGACAAAATCACATATACCAGTTACAAATGCGCTTGCAAGATTTGATGTCCCTGTTGGACAAAATAAAGTGGTAGTGAATGATTGTTTAGTTGCACAACTGAAGCATGGTAGACTTTCAGGTTCAAAAGATTCAACCCCTCGAAAGAGAAAGATAAGGGCACAATTGAATCCAAATGAAATCATTCAGGAAAAGAAAATGAATGATGAACCCACAATTCATTATTCTGTACTTTCAAAAAAAGAAAATGTTCTTGATGAGACACATGAGCAAATAGGGATCGTTCGAGACCGGGAATTAACTAGGGGTAACACTAAACTAGACTTAATGAATGCAAACCTAAAATTTAAAACACTCAAACAAACTAAAAGACTCAAAACAGCACAAACACACTCAAATCTGCCTAAAAACCACTTTCTGGGCAGTTTTGAGCACAAACACAAATTTGGACGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

369

Amino Acids

42.51

Weight (kDa)

9.55

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000161)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36192 FvH4_3g41702 FvH4_4g13933 FvH4_6g39331 FvH4_6g44542
malus_domestica MD17G1101700.v1.1
pyrus_communis pycom01g01810 pycom01g03340 pycom05g22610 pycom13g03220 pycom13g23770 pycom13g26870 pycom17g17400 pycom17g17410 pycom17g17890
rosa_chinensis RchiOBHm_Chr2g0129881 RchiOBHm_Chr2g0163801 RchiOBHm_Chr4g0392871 RchiOBHm_Chr7g0218471
rosa_multiflora Rmu_co8005914.1_g000001 Rmu_co8214666.1_g000002 Rmu_co8253889.1_g000001 Rmu_co8429419.1_g000001 Rmu_sc0000031.1_g000049 Rmu_sc0000091.1_g000004 Rmu_sc0000103.1_g000050 Rmu_sc0000147.1_g000047 Rmu_sc0000185.1_g000026 Rmu_sc0000235.1_g000056 Rmu_sc0000247.1_g000002 Rmu_sc0000310.1_g000010 Rmu_sc0000353.1_g000034 Rmu_sc0000353.1_g000035 Rmu_sc0000367.1_g000046 Rmu_sc0000420.1_g000034 Rmu_sc0000461.1_g000022 Rmu_sc0000544.1_g000007 Rmu_sc0000544.1_g000009 Rmu_sc0000607.1_g000032 Rmu_sc0000647.1_g000011 Rmu_sc0000675.1_g000049 Rmu_sc0000680.1_g000015 Rmu_sc0000795.1_g000112 Rmu_sc0000851.1_g000013 Rmu_sc0000868.1_g000019 Rmu_sc0000869.1_g000009 Rmu_sc0000898.1_g000061 Rmu_sc0000990.1_g000006 Rmu_sc0001009.1_g000006 Rmu_sc0001051.1_g000034 Rmu_sc0001067.1_g000005 Rmu_sc0001124.1_g000020 Rmu_sc0001142.1_g000016 Rmu_sc0001231.1_g000015 Rmu_sc0001235.1_g000013 Rmu_sc0001336.1_g000036 Rmu_sc0001552.1_g000033 Rmu_sc0001604.1_g000003 Rmu_sc0001605.1_g000009 Rmu_sc0001605.1_g000011 Rmu_sc0001668.1_g000025 Rmu_sc0001698.1_g000009 Rmu_sc0001721.1_g000010 Rmu_sc0001735.1_g000004 Rmu_sc0001832.1_g000017 Rmu_sc0001844.1_g000024 Rmu_sc0001880.1_g000026 Rmu_sc0001896.1_g000018 Rmu_sc0001918.1_g000011 Rmu_sc0002072.1_g000022 Rmu_sc0002109.1_g000003 Rmu_sc0002142.1_g000017 Rmu_sc0002166.1_g000001 Rmu_sc0002207.1_g000015 Rmu_sc0002346.1_g000001 Rmu_sc0002460.1_g000009 Rmu_sc0002460.1_g000043 Rmu_sc0002460.1_g000071 Rmu_sc0002672.1_g000001 Rmu_sc0002699.1_g000019 Rmu_sc0002736.1_g000007 Rmu_sc0002773.1_g000003 Rmu_sc0002893.1_g000006 Rmu_sc0002968.1_g000014 Rmu_sc0002968.1_g000015 Rmu_sc0003032.1_g000020 Rmu_sc0003044.1_g000024 Rmu_sc0003200.1_g000007 Rmu_sc0003261.1_g000031 Rmu_sc0003347.1_g000014 Rmu_sc0003385.1_g000019 Rmu_sc0003385.1_g000020 Rmu_sc0003419.1_g000017 Rmu_sc0003605.1_g000029 Rmu_sc0003679.1_g000010 Rmu_sc0003708.1_g000002 Rmu_sc0003737.1_g000033 Rmu_sc0003981.1_g000021 Rmu_sc0004101.1_g000009 Rmu_sc0004119.1_g000009 Rmu_sc0004248.1_g000021 Rmu_sc0004362.1_g000013 Rmu_sc0004520.1_g000020 Rmu_sc0004741.1_g000017 Rmu_sc0004771.1_g000007 Rmu_sc0004835.1_g000027 Rmu_sc0004969.1_g000010 Rmu_sc0005037.1_g000002 Rmu_sc0005272.1_g000006 Rmu_sc0005584.1_g000017 Rmu_sc0005652.1_g000005 Rmu_sc0005670.1_g000010 Rmu_sc0005781.1_g000035 Rmu_sc0005816.1_g000026 Rmu_sc0005852.1_g000003 Rmu_sc0006087.1_g000008 Rmu_sc0006152.1_g000005 Rmu_sc0006160.1_g000001 Rmu_sc0006313.1_g000014 Rmu_sc0006347.1_g000001 Rmu_sc0006583.1_g000024 Rmu_sc0006711.1_g000018 Rmu_sc0006952.1_g000003 Rmu_sc0006976.1_g000006 Rmu_sc0007115.1_g000006 Rmu_sc0007490.1_g000028 Rmu_sc0007740.1_g000003 Rmu_sc0007779.1_g000001 Rmu_sc0007907.1_g000003 Rmu_sc0007967.1_g000003 Rmu_sc0008456.1_g000006 Rmu_sc0008578.1_g000003 Rmu_sc0008642.1_g000001 Rmu_sc0008848.1_g000001 Rmu_sc0010065.1_g000009 Rmu_sc0010263.1_g000003 Rmu_sc0010632.1_g000004 Rmu_sc0011050.1_g000004 Rmu_sc0011563.1_g000005 Rmu_sc0011854.1_g000001 Rmu_sc0012216.1_g000003 Rmu_sc0012689.1_g000002 Rmu_sc0012945.1_g000001 Rmu_sc0013071.1_g000003 Rmu_sc0013305.1_g000008 Rmu_sc0013698.1_g000009 Rmu_sc0013772.1_g000007 Rmu_sc0013874.1_g000001 Rmu_sc0014217.1_g000001 Rmu_sc0014478.1_g000019 Rmu_sc0014724.1_g000002 Rmu_sc0016563.1_g000002 Rmu_sc0016563.1_g000003 Rmu_sc0017108.1_g000001 Rmu_sc0017408.1_g000002 Rmu_sc0020248.1_g000001 Rmu_sc0021416.1_g000005 Rmu_sc0022221.1_g000003 Rmu_sc0022402.1_g000002 Rmu_sc0023172.1_g000001 Rmu_sc0024783.1_g000001 Rmu_sc0028152.1_g000001 Rmu_sc0028541.1_g000001 Rmu_sc0029935.1_g000001 Rmu_sc0030041.1_g000001 Rmu_sc0035924.1_g000001 Rmu_sc0038113.1_g000002 Rmu_sc0040377.1_g000001 Rmu_ssc0000041.1_g000024 Rmu_ssc0000197.1_g000066 Rmu_ssc0000213.1_g000082 Rmu_ssc0000215.1_g000018
rosa_roxburghii Rroxscaffold_152G00434500 Rroxscaffold_3G00223490 Rroxscaffold_3G00226440 Rroxscaffold_3G00237960 Rroxscaffold_6G00394150
rosa_samantha Rh5CG379600 Rh5CG449200 Rh6DG448500
rosa_wichuraiana Rw0G004320 Rw1G010800 Rw2G031280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 67, 1066
AccI GTMKAC 2 cut(s) 136, 760
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 548
AclWI GGATC 2 cut(s) 385, 935
AcsI RAATTY 5 cut(s) 29, 311, 438, 992, 1091
AcuI CTGAAG 2 cut(s) 260, 770
AfaI GTAC 2 cut(s) 149, 879
AfiI CCNNNNNNNGG 3 cut(s) 67, 554, 1066
AflIII ACRYGT 2 cut(s) 120, 491
AgsI TTSAA 9 cut(s) 34, 58, 215, 324, 602, 774, 783, 817, 885
AluBI AGCT 4 cut(s) 271, 287, 509, 542
AluI AGCT 4 cut(s) 271, 287, 509, 542
Alw21I GWGCWC 1 cut(s) 1083
Alw26I GTCTC 4 cut(s) 323, 530, 902, 930
AlwI GGATC 2 cut(s) 385, 935
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 5 cut(s) 29, 311, 438, 992, 1091
Asp700I GAANNNNTTC 2 cut(s) 831, 897
AspLEI GCGC 2 cut(s) 293, 682
AspS9I GGNCC 2 cut(s) 49, 70
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 1 cut(s) 450
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 811
Bbv12I GWGCWC 1 cut(s) 1083
BbvI GCAGC 1 cut(s) 258
BccI CCATC 3 cut(s) 21, 352, 469
BceAI ACGGC 1 cut(s) 535
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 4 cut(s) 323, 530, 902, 930
BfaI CTAG 4 cut(s) 200, 623, 951, 968
BfmI CTRYAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 941
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 49, 70
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 941
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 2 cut(s) 247, 616
BmuI ACTGGG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 941
BsaI GGTCTC 2 cut(s) 323, 930
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 554, 1066
Bse1I ACTGG 3 cut(s) 322, 438, 668
BseLI CCNNNNNNNGG 3 cut(s) 67, 554, 1066
BseNI ACTGG 3 cut(s) 322, 438, 668
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 1083
BsiSI CCGG 1 cut(s) 940
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 3 cut(s) 67, 554, 1066
BsmAI GTCTC 4 cut(s) 323, 530, 902, 930
BsmFI GGGAC 1 cut(s) 683
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 2 cut(s) 323, 930
Bsp1286I GDGCHC 2 cut(s) 811, 1083
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 3 cut(s) 115, 377, 927
BspACI CCGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 2 cut(s) 300, 532
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 2 cut(s) 385, 935
BspTNI GGTCTC 2 cut(s) 323, 930
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 3 cut(s) 322, 438, 668
BssMI GATC 3 cut(s) 115, 377, 927
BssNAI GTATAC 1 cut(s) 137
Bst1107I GTATAC 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 570
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 289, 684
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 2 cut(s) 293, 682
BstKTI GATC 3 cut(s) 118, 380, 930
BstMAI GTCTC 4 cut(s) 323, 530, 902, 930
BstMBI GATC 3 cut(s) 115, 377, 927
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNSI RCATGY 2 cut(s) 124, 495
BstSCI CCNGG 1 cut(s) 939
BstSFI CTRYAG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 811
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 289, 684
CciI TCATGA 2 cut(s) 300, 532
CfoI GCGC 2 cut(s) 293, 682
Cfr13I GGNCC 2 cut(s) 49, 70
Csp6I GTAC 2 cut(s) 148, 878
CviAII CATG 7 cut(s) 121, 230, 301, 492, 533, 755, 914
CviJI RGCY 6 cut(s) 51, 271, 287, 339, 509, 542
CviKI_1 RGCY 6 cut(s) 51, 271, 287, 339, 509, 542
CviQI GTAC 2 cut(s) 148, 878
DpnI GATC 3 cut(s) 117, 379, 929
DpnII GATC 3 cut(s) 115, 377, 927
DraI TTTAAA 1 cut(s) 997
Eco31I GGTCTC 2 cut(s) 323, 930
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 260, 770
EcoRI GAATTC 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 262
FaeI CATG 7 cut(s) 124, 233, 304, 495, 536, 758, 917
FaqI GGGAC 1 cut(s) 683
FatI CATG 7 cut(s) 120, 229, 300, 491, 532, 754, 913
FauI CCCGC 1 cut(s) 555
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 2 cut(s) 136, 760
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 4 cut(s) 200, 623, 951, 968
GlaI GCGC 2 cut(s) 292, 681
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 940
HhaI GCGC 2 cut(s) 293, 682
Hin1II CATG 7 cut(s) 124, 233, 304, 495, 536, 758, 917
Hin6I GCGC 2 cut(s) 291, 680
HinP1I GCGC 2 cut(s) 291, 680
HinfI GANTC 6 cut(s) 7, 364, 455, 779, 817, 1020
HpaII CCGG 1 cut(s) 940
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 2 cut(s) 137, 761
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 6 cut(s) 301, 533, 574, 836, 902, 935
Hpy8I GTNNAC 2 cut(s) 137, 761
HpyCH4III ACNGT 1 cut(s) 570
HpyCH4V TGCA 7 cut(s) 24, 260, 518, 629, 686, 743, 983
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
Hsp92II CATG 7 cut(s) 124, 233, 304, 495, 536, 758, 917
HspAI GCGC 2 cut(s) 291, 680
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 377, 927
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 247, 616
MaeI CTAG 4 cut(s) 200, 623, 951, 968
MaeIII GTNAC 4 cut(s) 524, 649, 670, 956
MalI GATC 3 cut(s) 117, 379, 929
MboI GATC 3 cut(s) 115, 377, 927
MboII GAAGA 3 cut(s) 571, 589, 590
MfeI CAATTG 2 cut(s) 324, 812
MhlI GDGCHC 2 cut(s) 811, 1083
MlyI GAGTC 2 cut(s) 358, 1014
MmeI TCCRAC 2 cut(s) 207, 685
MnlI CCTC 3 cut(s) 139, 365, 798
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 2 cut(s) 831, 897
MseI TTAA 7 cut(s) 173, 188, 281, 947, 974, 996, 1105
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 1 cut(s) 940
MspR9I CCNGG 1 cut(s) 941
MunI CAATTG 2 cut(s) 324, 812
Mva1269I GAATGC 1 cut(s) 985
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 941
NdeII GATC 3 cut(s) 115, 377, 927
NlaIII CATG 7 cut(s) 124, 233, 304, 495, 536, 758, 917
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 2 cut(s) 524, 649
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 2 cut(s) 124, 495
PagI TCATGA 2 cut(s) 300, 532
PciI ACATGT 2 cut(s) 120, 491
PctI GAATGC 1 cut(s) 985
PdmI GAANNNNTTC 2 cut(s) 831, 897
PfeI GAWTC 4 cut(s) 7, 455, 779, 817
PflMI CCANNNNNTGG 2 cut(s) 67, 1066
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 358, 1014
PpsI GAGTC 2 cut(s) 358, 1014
PscI ACATGT 2 cut(s) 120, 491
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 2 cut(s) 49, 70
RsaI GTAC 2 cut(s) 149, 879
RsaNI GTAC 2 cut(s) 148, 878
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 7 cut(s) 173, 188, 281, 947, 974, 996, 1105
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 3 cut(s) 115, 377, 927
Sau96I GGNCC 2 cut(s) 49, 70
SchI GAGTC 2 cut(s) 358, 1014
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 2 cut(s) 811, 1083
SetI ASST 8 cut(s) 66, 273, 289, 335, 511, 544, 772, 990
SfaNI GCATC 2 cut(s) 247, 616
SfcI CTRYAG 1 cut(s) 334
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 531
SsiI CCGC 1 cut(s) 548
SspMI CTAG 4 cut(s) 200, 623, 951, 968
StyD4I CCNGG 1 cut(s) 939
TaaI ACNGT 1 cut(s) 570
TaqI TCGA 4 cut(s) 78, 141, 790, 934
TatI WGTACW 2 cut(s) 147, 877
TfiI GAWTC 4 cut(s) 7, 455, 779, 817
Tru1I TTAA 7 cut(s) 173, 188, 281, 947, 974, 996, 1105
Tru9I TTAA 7 cut(s) 173, 188, 281, 947, 974, 996, 1105
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 524, 649
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 524, 649
TspDTI ATGAA 9 cut(s) 317, 521, 584, 596, 840, 857, 863, 870, 992
TspRI CASTG 1 cut(s) 322
Van91I CCANNNNNTGG 2 cut(s) 67, 1066
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 5 cut(s) 29, 311, 438, 992, 1091
XceI RCATGY 2 cut(s) 124, 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmiI GTMKAC 2 cut(s) 136, 760
XmnI GAANNNNTTC 2 cut(s) 831, 897
XspI CTAG 4 cut(s) 200, 623, 951, 968
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.