Leucine rich repeat
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 129 - 177 | 3.9e-10 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 65 |
| AciI | CCGC | 2 cut(s) | 283, 692 |
| AcoI | YGGCCR | 1 cut(s) | 140 |
| AcsI | RAATTY | 3 cut(s) | 82, 212, 704 |
| AcyI | GRCGYC | 1 cut(s) | 531 |
| AfaI | GTAC | 1 cut(s) | 42 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 138, 527, 741 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 3 cut(s) | 81, 650, 834 |
| AjnI | CCWGG | 2 cut(s) | 131, 490 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 158, 190 |
| AluBI | AGCT | 2 cut(s) | 151, 363 |
| AluI | AGCT | 2 cut(s) | 151, 363 |
| Alw21I | GWGCWC | 1 cut(s) | 282 |
| Alw26I | GTCTC | 3 cut(s) | 484, 503, 707 |
| AoxI | GGCC | 3 cut(s) | 140, 316, 626 |
| ApeKI | GCWGC | 1 cut(s) | 752 |
| ApoI | RAATTY | 3 cut(s) | 82, 212, 704 |
| AseI | ATTAAT | 2 cut(s) | 375, 552 |
| AspS9I | GGNCC | 2 cut(s) | 162, 627 |
| AsuHPI | GGTGA | 1 cut(s) | 117 |
| AvaII | GGWCC | 1 cut(s) | 162 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 24, 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 282 |
| BbvI | GCAGC | 1 cut(s) | 739 |
| BccI | CCATC | 2 cut(s) | 618, 743 |
| BciT130I | CCWGG | 2 cut(s) | 133, 492 |
| BcoDI | GTCTC | 3 cut(s) | 484, 503, 707 |
| BfaI | CTAG | 2 cut(s) | 575, 621 |
| BisI | GCNGC | 2 cut(s) | 692, 753 |
| BlsI | GCNGC | 2 cut(s) | 693, 754 |
| Bme1390I | CCNGG | 2 cut(s) | 133, 492 |
| Bme18I | GGWCC | 1 cut(s) | 162 |
| BmgT120I | GGNCC | 2 cut(s) | 162, 627 |
| BmiI | GGNNCC | 1 cut(s) | 163 |
| BmrFI | CCNGG | 2 cut(s) | 133, 492 |
| BoxI | GACNNNNGTC | 1 cut(s) | 719 |
| Bpu10I | CCTNAGC | 2 cut(s) | 323, 667 |
| BsaHI | GRCGYC | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 4 cut(s) | 393, 490, 491, 739 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 502, 532 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 138, 527, 741 |
| Bse3DI | GCAATG | 1 cut(s) | 280 |
| BseBI | CCWGG | 2 cut(s) | 133, 492 |
| BseDI | CCNNGG | 4 cut(s) | 393, 490, 491, 739 |
| BseGI | GGATG | 1 cut(s) | 735 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 138, 527, 741 |
| BseMI | GCAATG | 1 cut(s) | 280 |
| BseXI | GCAGC | 1 cut(s) | 739 |
| Bsh1236I | CGCG | 1 cut(s) | 65 |
| BshFI | GGCC | 3 cut(s) | 142, 318, 628 |
| BsiHKAI | GWGCWC | 1 cut(s) | 282 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 138, 527, 741 |
| BsmAI | GTCTC | 3 cut(s) | 484, 503, 707 |
| BsmBI | CGTCTC | 1 cut(s) | 503 |
| BsnI | GGCC | 3 cut(s) | 142, 318, 628 |
| Bsp1286I | GDGCHC | 1 cut(s) | 282 |
| BspACI | CCGC | 2 cut(s) | 283, 692 |
| BspANI | GGCC | 3 cut(s) | 142, 318, 628 |
| BspFNI | CGCG | 1 cut(s) | 65 |
| BspHI | TCATGA | 1 cut(s) | 414 |
| BspLI | GGNNCC | 1 cut(s) | 163 |
| BsrDI | GCAATG | 1 cut(s) | 280 |
| BssECI | CCNNGG | 4 cut(s) | 393, 490, 491, 739 |
| BssNI | GRCGYC | 1 cut(s) | 531 |
| BssT1I | CCWWGG | 2 cut(s) | 393, 739 |
| Bst2UI | CCWGG | 2 cut(s) | 133, 492 |
| Bst4CI | ACNGT | 1 cut(s) | 40 |
| Bst6I | CTCTTC | 1 cut(s) | 501 |
| BstACI | GRCGYC | 1 cut(s) | 531 |
| BstC8I | GCNNGC | 4 cut(s) | 144, 320, 460, 729 |
| BstDEI | CTNAG | 3 cut(s) | 323, 667, 797 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 525 |
| BstF5I | GGATG | 1 cut(s) | 735 |
| BstFNI | CGCG | 1 cut(s) | 65 |
| BstMAI | GTCTC | 3 cut(s) | 484, 503, 707 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 148 |
| BstNI | CCWGG | 2 cut(s) | 133, 492 |
| BstNSI | RCATGY | 1 cut(s) | 462 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 719 |
| BstSCI | CCNGG | 2 cut(s) | 131, 490 |
| BstUI | CGCG | 1 cut(s) | 65 |
| BstV1I | GCAGC | 1 cut(s) | 739 |
| BsuRI | GGCC | 3 cut(s) | 142, 318, 628 |
| BtgZI | GCGATG | 1 cut(s) | 46 |
| BtsCI | GGATG | 1 cut(s) | 735 |
| Cac8I | GCNNGC | 4 cut(s) | 144, 320, 460, 729 |
| CciI | TCATGA | 1 cut(s) | 414 |
| Cfr13I | GGNCC | 2 cut(s) | 162, 627 |
| CseI | GACGC | 1 cut(s) | 520 |
| Csp6I | GTAC | 1 cut(s) | 41 |
| CviAII | CATG | 4 cut(s) | 287, 415, 459, 847 |
| CviJI | RGCY | 8 cut(s) | 119, 142, 151, 318, 363, 399, 581, 628 |
| CviKI_1 | RGCY | 8 cut(s) | 119, 142, 151, 318, 363, 399, 581, 628 |
| CviQI | GTAC | 1 cut(s) | 41 |
| DdeI | CTNAG | 3 cut(s) | 323, 667, 797 |
| EaeI | YGGCCR | 1 cut(s) | 140 |
| Eam1104I | CTCTTC | 1 cut(s) | 501 |
| EarI | CTCTTC | 1 cut(s) | 501 |
| Eco130I | CCWWGG | 2 cut(s) | 393, 739 |
| Eco47I | GGWCC | 1 cut(s) | 162 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 525 |
| EcoRII | CCWGG | 2 cut(s) | 131, 490 |
| EcoT14I | CCWWGG | 2 cut(s) | 393, 739 |
| ErhI | CCWWGG | 2 cut(s) | 393, 739 |
| Esp3I | CGTCTC | 1 cut(s) | 503 |
| FaeI | CATG | 4 cut(s) | 290, 418, 462, 850 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 316, 348 |
| FatI | CATG | 4 cut(s) | 286, 414, 458, 846 |
| FauNDI | CATATG | 1 cut(s) | 308 |
| Fnu4HI | GCNGC | 2 cut(s) | 692, 753 |
| FokI | GGATG | 1 cut(s) | 722 |
| Fsp4HI | GCNGC | 2 cut(s) | 692, 753 |
| FspBI | CTAG | 2 cut(s) | 575, 621 |
| GluI | GCNGC | 2 cut(s) | 692, 753 |
| HaeIII | GGCC | 3 cut(s) | 142, 318, 628 |
| HgaI | GACGC | 1 cut(s) | 520 |
| Hin1I | GRCGYC | 1 cut(s) | 531 |
| Hin1II | CATG | 4 cut(s) | 290, 418, 462, 850 |
| HinfI | GANTC | 4 cut(s) | 22, 77, 155, 355 |
| HphI | GGTGA | 1 cut(s) | 117 |
| Hpy166II | GTNNAC | 1 cut(s) | 171 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 549 |
| Hpy188III | TCNNGA | 4 cut(s) | 382, 415, 575, 621 |
| Hpy8I | GTNNAC | 1 cut(s) | 171 |
| HpyAV | CCTTC | 5 cut(s) | 138, 415, 598, 627, 656 |
| HpyCH4III | ACNGT | 1 cut(s) | 40 |
| HpyCH4IV | ACGT | 2 cut(s) | 346, 512 |
| HpyCH4V | TGCA | 4 cut(s) | 273, 448, 472, 660 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 148 |
| HpyF3I | CTNAG | 3 cut(s) | 323, 667, 797 |
| HpySE526I | ACGT | 2 cut(s) | 346, 512 |
| Hsp92I | GRCGYC | 1 cut(s) | 531 |
| Hsp92II | CATG | 4 cut(s) | 290, 418, 462, 850 |
| LmnI | GCTCC | 1 cut(s) | 368 |
| LpnPI | CCDG | 9 cut(s) | 118, 144, 145, 156, 163, 332, 477, 504, 741 |
| Lsp1109I | GCAGC | 1 cut(s) | 739 |
| MaeI | CTAG | 2 cut(s) | 575, 621 |
| MaeII | ACGT | 2 cut(s) | 346, 512 |
| MaeIII | GTNAC | 1 cut(s) | 123 |
| MboII | GAAGA | 3 cut(s) | 397, 445, 518 |
| MhlI | GDGCHC | 1 cut(s) | 282 |
| MluCI | AATT | 9 cut(s) | 82, 212, 267, 372, 376, 653, 704, 822, 834 |
| MlyI | GAGTC | 1 cut(s) | 349 |
| MnlI | CCTC | 4 cut(s) | 7, 411, 473, 843 |
| MseI | TTAA | 7 cut(s) | 236, 249, 266, 300, 375, 552, 821 |
| MslI | CAYNNNNRTG | 1 cut(s) | 285 |
| MspR9I | CCNGG | 2 cut(s) | 133, 492 |
| MvaI | CCWGG | 2 cut(s) | 133, 492 |
| MvnI | CGCG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 148 |
| NdeI | CATATG | 1 cut(s) | 308 |
| NlaIII | CATG | 4 cut(s) | 290, 418, 462, 850 |
| NlaIV | GGNNCC | 1 cut(s) | 163 |
| NmuCI | GTSAC | 1 cut(s) | 123 |
| NspI | RCATGY | 1 cut(s) | 462 |
| PaeI | GCATGC | 1 cut(s) | 462 |
| PagI | TCATGA | 1 cut(s) | 414 |
| PasI | CCCWGGG | 1 cut(s) | 491 |
| PfeI | GAWTC | 3 cut(s) | 22, 77, 155 |
| PkrI | GCNGC | 2 cut(s) | 693, 754 |
| PleI | GAGTC | 1 cut(s) | 349 |
| PpsI | GAGTC | 1 cut(s) | 349 |
| PshAI | GACNNNNGTC | 1 cut(s) | 719 |
| PshBI | ATTAAT | 2 cut(s) | 375, 552 |
| Psp6I | CCWGG | 2 cut(s) | 131, 490 |
| PspGI | CCWGG | 2 cut(s) | 131, 490 |
| PspN4I | GGNNCC | 1 cut(s) | 163 |
| PspPI | GGNCC | 2 cut(s) | 162, 627 |
| RsaI | GTAC | 1 cut(s) | 42 |
| RsaNI | GTAC | 1 cut(s) | 41 |
| RseI | CAYNNNNRTG | 1 cut(s) | 285 |
| SaqAI | TTAA | 7 cut(s) | 236, 249, 266, 300, 375, 552, 821 |
| SatI | GCNGC | 2 cut(s) | 692, 753 |
| Sau96I | GGNCC | 2 cut(s) | 162, 627 |
| SchI | GAGTC | 1 cut(s) | 349 |
| ScrFI | CCNGG | 2 cut(s) | 133, 492 |
| SduI | GDGCHC | 1 cut(s) | 282 |
| SinI | GGWCC | 1 cut(s) | 162 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 285 |
| SphI | GCATGC | 1 cut(s) | 462 |
| Sse9I | AATT | 9 cut(s) | 82, 212, 267, 372, 376, 653, 704, 822, 834 |
| SsiI | CCGC | 2 cut(s) | 283, 692 |
| SspMI | CTAG | 2 cut(s) | 575, 621 |
| StyD4I | CCNGG | 2 cut(s) | 131, 490 |
| StyI | CCWWGG | 2 cut(s) | 393, 739 |
| TaaI | ACNGT | 1 cut(s) | 40 |
| TaiI | ACGT | 2 cut(s) | 349, 515 |
| TaqI | TCGA | 2 cut(s) | 153, 809 |
| TasI | AATT | 9 cut(s) | 82, 212, 267, 372, 376, 653, 704, 822, 834 |
| TauI | GCSGC | 1 cut(s) | 694 |
| TfiI | GAWTC | 3 cut(s) | 22, 77, 155 |
| Tru1I | TTAA | 7 cut(s) | 236, 249, 266, 300, 375, 552, 821 |
| Tru9I | TTAA | 7 cut(s) | 236, 249, 266, 300, 375, 552, 821 |
| TseFI | GTSAC | 1 cut(s) | 123 |
| TseI | GCWGC | 1 cut(s) | 752 |
| Tsp45I | GTSAC | 1 cut(s) | 123 |
| TspDTI | ATGAA | 5 cut(s) | 75, 247, 403, 453, 857 |
| VpaK11BI | GGWCC | 1 cut(s) | 162 |
| VspI | ATTAAT | 2 cut(s) | 375, 552 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 525 |
| XapI | RAATTY | 3 cut(s) | 82, 212, 704 |
| XbaI | TCTAGA | 2 cut(s) | 574, 620 |
| XceI | RCATGY | 1 cut(s) | 462 |
| XspI | CTAG | 2 cut(s) | 575, 621 |