FvH4_1g14871

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000206
Physical Location & Seq
Reverse (-)
8304758 .. 8305924
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14871.t1

Sequence Viewer

Length: 624 bp
ATGGGTTCTAGTTGGCTTCCCTCCGAAGAGTTACAATTGTGTGTTTCTTGGGTACGACAATCCACTTGCAACATCACCGGCCGATATCAAAACAAAGACAATTTGTGGAAGAAAGTTCATGACGATTACGTCAAAAATTGGTGTGGCGATCCCGAAAATCCTCTAGCCGAGCCTCGTACGAAAGTTGCGCTCGAATCACATTTTCCGCACTTGAAGAAATTGCTCAAGAAGTGGCATACATGTCTATACAAATCAAGAAACCGTGCGGCTAGCAGGACGAATTTGGTAGATGAGGAAACTCAAGCTCAATCATTATATTTCAAGGATGTGGGCAAGAAATTTGACAAGAAAGAATGTTATGAAGCGGTGATAAATCATCCTCATTTCTTGACGGTTGTGAGTACTCCTTCTCCGTTTGATCGGAATTTTCCAATTTCTCCCGAGCTCCATGACACGGATGGGCATGTTGACTTGGATGATGATGAAGGATTCACAATTCCGACATCCAACCAAGAGAGACCTCGTCCCTCAAGCCCGGTTAGGCCTATGGGAGTAAAGGCGGCCAAAGAAGCAAAGAAGAAGGGAAAAAAAAAGGTATGGCGGAGAAAGACGAGAAGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

208

Amino Acids

23.97

Weight (kDa)

9.37

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AciI CCGC 5 cut(s) 206, 266, 365, 560, 601
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 2 cut(s) 79, 561
AcsI RAATTY 3 cut(s) 280, 338, 424
AfaI GTAC 3 cut(s) 54, 178, 403
AfiI CCNNNNNNNGG 1 cut(s) 454
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 2 cut(s) 214, 322
AhdI GACNNNNNGTC 1 cut(s) 615
AluBI AGCT 2 cut(s) 305, 445
AluI AGCT 2 cut(s) 305, 445
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 3 cut(s) 79, 542, 561
ApoI RAATTY 3 cut(s) 280, 338, 424
AspLEI GCGC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 2 cut(s) 67, 379
AsuNHI GCTAGC 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 440
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BccI CCATC 1 cut(s) 452
BcnI CCSGG 1 cut(s) 536
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 3 cut(s) 9, 164, 270
BisI GCNGC 2 cut(s) 267, 561
BlsI GCNGC 2 cut(s) 268, 562
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 536
BmeRI GACNNNNNGTC 1 cut(s) 615
BmeT110I CYCGRG 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 536
BmtI GCTAGC 1 cut(s) 273
BpuEI CTTGAG 3 cut(s) 209, 285, 514
BpuMI CCSGG 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 511
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse118I RCCGGY 1 cut(s) 77
BseGI GGATG 5 cut(s) 331, 376, 463, 481, 503
BseLI CCNNNNNNNGG 1 cut(s) 454
BseX3I CGGCCG 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 81, 544, 563
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 2 cut(s) 78, 536
BsiWI CGTACG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 511
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 3 cut(s) 81, 544, 563
Bso31I GGTCTC 1 cut(s) 511
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 2 cut(s) 148, 418
BspACI CCGC 5 cut(s) 206, 266, 365, 560, 601
BspANI GGCC 3 cut(s) 81, 544, 563
BspHI TCATGA 1 cut(s) 118
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 2 cut(s) 148, 418
Bst4CI ACNGT 2 cut(s) 263, 394
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 271
BstF5I GGATG 5 cut(s) 331, 376, 463, 481, 503
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 151, 421
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 2 cut(s) 148, 418
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNSI RCATGY 2 cut(s) 243, 467
BstSCI CCNGG 1 cut(s) 534
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 3 cut(s) 81, 544, 563
BtsCI GGATG 5 cut(s) 331, 376, 463, 481, 503
Cac8I GCNNGC 1 cut(s) 271
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 77
Csp6I GTAC 3 cut(s) 53, 177, 402
CviAII CATG 4 cut(s) 119, 240, 449, 464
CviQI GTAC 3 cut(s) 53, 177, 402
DpnI GATC 2 cut(s) 150, 420
DpnII GATC 2 cut(s) 148, 418
DrdI GACNNNNNNGTC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 615
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 79, 561
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 21
Eam1105I GACNNNNNGTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 445
EclXI CGGCCG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 511
Eco32I GATATC 1 cut(s) 86
Eco52I CGGCCG 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 445
EcoRV GATATC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 447
FaeI CATG 4 cut(s) 122, 243, 452, 467
FaqI GGGAC 1 cut(s) 510
FatI CATG 4 cut(s) 118, 239, 448, 463
Fnu4HI GCNGC 2 cut(s) 267, 561
FokI GGATG 5 cut(s) 338, 363, 470, 488, 490
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 2 cut(s) 267, 561
FspBI CTAG 3 cut(s) 9, 164, 270
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 267, 561
HaeIII GGCC 3 cut(s) 81, 544, 563
HapII CCGG 2 cut(s) 78, 536
HhaI GCGC 1 cut(s) 190
Hin1II CATG 4 cut(s) 122, 243, 452, 467
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 2 cut(s) 194, 489
HpaII CCGG 2 cut(s) 78, 536
HphI GGTGA 2 cut(s) 67, 379
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 3 cut(s) 25, 423, 501
Hpy188III TCNNGA 6 cut(s) 119, 152, 226, 255, 388, 440
Hpy8I GTNNAC 1 cut(s) 469
HpyAV CCTTC 3 cut(s) 417, 479, 574
HpyCH4III ACNGT 2 cut(s) 263, 394
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 4 cut(s) 122, 243, 452, 467
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 148, 418
LmnI GCTCC 1 cut(s) 450
LpnPI CCDG 3 cut(s) 91, 259, 549
MaeI CTAG 3 cut(s) 9, 164, 270
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 150, 420
MboI GATC 2 cut(s) 148, 418
MboII GAAGA 4 cut(s) 38, 121, 226, 589
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 9 cut(s) 35, 100, 136, 218, 280, 338, 424, 432, 495
MmeI TCCRAC 2 cut(s) 524, 531
MnlI CCTC 7 cut(s) 31, 171, 183, 286, 390, 531, 538
MspI CCGG 2 cut(s) 78, 536
MspR9I CCNGG 1 cut(s) 536
MunI CAATTG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 569
NciI CCSGG 1 cut(s) 536
NdeII GATC 2 cut(s) 148, 418
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 4 cut(s) 122, 243, 452, 467
NmeAIII GCCGAG 1 cut(s) 193
NspI RCATGY 2 cut(s) 243, 467
PagI TCATGA 1 cut(s) 118
PceI AGGCCT 1 cut(s) 544
PciI ACATGT 1 cut(s) 239
PfeI GAWTC 2 cut(s) 194, 489
Pfl23II CGTACG 1 cut(s) 176
PflFI GACNNNGTC 1 cut(s) 522
PkrI GCNGC 2 cut(s) 268, 562
PscI ACATGT 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 447
PspLI CGTACG 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 522
RsaI GTAC 3 cut(s) 54, 178, 403
RsaNI GTAC 3 cut(s) 53, 177, 402
SacI GAGCTC 1 cut(s) 447
SatI GCNGC 2 cut(s) 267, 561
Sau3AI GATC 2 cut(s) 148, 418
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 1 cut(s) 447
SetI ASST 5 cut(s) 132, 307, 447, 523, 597
SmlI CTYRAG 3 cut(s) 224, 300, 529
SmoI CTYRAG 3 cut(s) 224, 300, 529
Sse9I AATT 9 cut(s) 35, 100, 136, 218, 280, 338, 424, 432, 495
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 5 cut(s) 206, 266, 365, 560, 601
SspMI CTAG 3 cut(s) 9, 164, 270
SstI GAGCTC 1 cut(s) 447
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 1 cut(s) 534
TaaI ACNGT 2 cut(s) 263, 394
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 192
TasI AATT 9 cut(s) 35, 100, 136, 218, 280, 338, 424, 432, 495
TatI WGTACW 1 cut(s) 401
TauI GCSGC 2 cut(s) 269, 563
TfiI GAWTC 2 cut(s) 194, 489
TspDTI ATGAA 3 cut(s) 107, 375, 498
TspGWI ACGGA 2 cut(s) 402, 470
Tth111I GACNNNGTC 1 cut(s) 522
XapI RAATTY 3 cut(s) 280, 338, 424
XceI RCATGY 2 cut(s) 243, 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 3 cut(s) 9, 164, 270
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.