pycom05g04740

gpi-anchored protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
5577046 .. 5577459
414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04740.1

Sequence Viewer

Length: 414 bp
ATGGAGGAACTTACTCGTCAAGGTGAACTGAACATGGCATGGGAAAAGGCTAGAGATGAGGAAAAAGCTACTGCTATGGCAGCAATTATTGCAGCTACTGAGGCTCGTGATGCGGCGGCTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGATGATTAGAGAAGCACTTCATCGAGAGAATGAGATGCTTAGAGAAGAAAGGATGGCTCAAACAGATCGTGACACTATGAACAAGTCTCTAGTAGGACTGTCTCCGAATTCAAAATATTTTTGGACATCAGAAAAAAGAGATGTCGTGCGAAGAAGGCGTGCAAGAGATGCCAAAACAAGTCAAGGGGGTTCCAGCTACAGAAATCCTAGCAACCAAGATCCTAGCACCACATATCCTAACTCCACAGACTTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.87

Weight (kDa)

5.98

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 113, 116
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 262
AgsI TTSAA 1 cut(s) 267
AluBI AGCT 3 cut(s) 68, 95, 351
AluI AGCT 3 cut(s) 68, 95, 351
Alw26I GTCTC 3 cut(s) 118, 246, 261
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 80, 92
ApoI RAATTY 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 35
BauI CACGAG 1 cut(s) 105
BbvI GCAGC 2 cut(s) 92, 104
BccI CCATC 1 cut(s) 202
BcoDI GTCTC 3 cut(s) 118, 246, 261
BfaI CTAG 4 cut(s) 51, 245, 363, 378
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 4 cut(s) 81, 93, 114, 117
BlsI GCNGC 4 cut(s) 82, 94, 115, 118
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 3 cut(s) 100, 180, 313
BseGI GGATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 90, 111
BseXI GCAGC 2 cut(s) 92, 104
BsmAI GTCTC 3 cut(s) 118, 246, 261
Bsp143I GATC 2 cut(s) 220, 373
BspACI CCGC 2 cut(s) 113, 116
BspCNI CTCAG 2 cut(s) 91, 112
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 1 cut(s) 368
BssMI GATC 2 cut(s) 220, 373
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 255
BstAPI GCANNNNNTGC 2 cut(s) 89, 323
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 99, 120, 194
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 2 cut(s) 223, 376
BstMAI GTCTC 3 cut(s) 118, 246, 261
BstMBI GATC 2 cut(s) 220, 373
BstMWI GCNNNNNNNGC 6 cut(s) 80, 89, 101, 110, 310, 323
BstSFI CTRYAG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 92, 104
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtsCI GGATG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 315
CaiI CAGNNNCTG 1 cut(s) 98
CviAII CATG 2 cut(s) 34, 39
CviJI RGCY 7 cut(s) 50, 68, 95, 104, 119, 212, 351
CviKI_1 RGCY 7 cut(s) 50, 68, 95, 104, 119, 212, 351
DdeI CTNAG 3 cut(s) 99, 120, 194
DpnI GATC 2 cut(s) 222, 375
DpnII GATC 2 cut(s) 220, 373
EcoRI GAATTC 1 cut(s) 262
FaeI CATG 2 cut(s) 37, 42
FaiI YATR 5 cut(s) 35, 40, 77, 233, 388
FatI CATG 2 cut(s) 33, 38
Fnu4HI GCNGC 4 cut(s) 81, 93, 114, 117
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 4 cut(s) 81, 93, 114, 117
FspBI CTAG 4 cut(s) 51, 245, 363, 378
GluI GCNGC 4 cut(s) 81, 93, 114, 117
Hin1II CATG 2 cut(s) 37, 42
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 261, 286
Hpy188III TCNNGA 4 cut(s) 107, 146, 179, 224
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 92, 317
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 89, 101, 110, 310, 323
HpyF3I CTNAG 3 cut(s) 99, 120, 194
Hsp92II CATG 2 cut(s) 37, 42
Kzo9I GATC 2 cut(s) 220, 373
LpnPI CCDG 1 cut(s) 361
Lsp1109I GCAGC 2 cut(s) 92, 104
LweI GCATC 3 cut(s) 100, 180, 313
MaeI CTAG 4 cut(s) 51, 245, 363, 378
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 222, 375
MboI GATC 2 cut(s) 220, 373
MboII GAAGA 2 cut(s) 212, 318
MflI RGATCY 1 cut(s) 373
MluCI AATT 2 cut(s) 84, 262
MnlI CCTC 2 cut(s) 52, 94
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 2 cut(s) 141, 412
MwoI GCNNNNNNNGC 6 cut(s) 80, 89, 101, 110, 310, 323
NdeII GATC 2 cut(s) 220, 373
NlaIII CATG 2 cut(s) 37, 42
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 171
PkrI GCNGC 4 cut(s) 82, 94, 115, 118
PspN4I GGNNCC 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 373
SaqAI TTAA 2 cut(s) 141, 412
SatI GCNGC 4 cut(s) 81, 93, 114, 117
Sau3AI GATC 2 cut(s) 220, 373
SetI ASST 4 cut(s) 25, 70, 97, 353
SfaNI GCATC 3 cut(s) 100, 180, 313
SfcI CTRYAG 1 cut(s) 352
Sse9I AATT 2 cut(s) 84, 262
SsiI CCGC 2 cut(s) 113, 116
SspI AATATT 1 cut(s) 272
SspMI CTAG 4 cut(s) 51, 245, 363, 378
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 145, 178
TasI AATT 2 cut(s) 84, 262
TauI GCSGC 2 cut(s) 116, 119
Tru1I TTAA 2 cut(s) 141, 412
Tru9I TTAA 2 cut(s) 141, 412
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 80, 92
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 164, 248
XapI RAATTY 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 4 cut(s) 51, 245, 363, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.