Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

14422353 .. 14423292

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGACCACTGGTGCAGGTACGAATTGGTTGCTTATTGAAGATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCCCTTACGGGTAATGAGATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAATTTTCTTGAGAAAATTGGTGGGAAAAGAACCAAAGAATCGATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCCTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAATTACTCGGATCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGGTGGGAATGTTGGAATATTGTCAAAGATTGTCCTAAATTTAGAGTTGTGCCAGTCGGTCCAGAAGTGTACATGAATAGCACCCCTCTACACTCTACACCCGATCATGTTCATGAAGATGATGCAGAAGAAGTGCCCGAAACGCCCCTCCCTGAACAAGCGTCGGGTTCGACCCGTTTTCCAATTAGGCCTCAAGGTAAGAAGGCTTCAAAGAGAAAAGGGAGTGCTTCCAAGAACGATTATGCAAAGTTCATGGAAGAACTTACTCGCCAAGGTGAATTGACTTTGGCGAGGGAACTGGCGAAAGATGAGGCTGATAAGGCTAGAGAGGCATCAAAAGCAGCAGCTGTTGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

234

Amino Acids

26.3

Weight (kDa)

7.71

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	189
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	5 cut(s)	19, 55, 217, 305, 413
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	38, 68, 290, 340, 552
AluBI	AGCT	4 cut(s)	60, 242, 299, 689
AluI	AGCT	4 cut(s)	60, 242, 299, 689
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	308, 683, 686
ApoI	RAATTY	1 cut(s)	380
AsiGI	ACCGGT	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	629
AsuII	TTCGAA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	480
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
BbvI	GCAGC	3 cut(s)	295, 695, 698
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	3 cut(s)	57, 243, 666
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	3 cut(s)	309, 684, 687
BlsI	GCNGC	3 cut(s)	310, 685, 688
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmsI	GCATC	3 cut(s)	90, 454, 683
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	164, 519
Bsa29I	ATCGAT	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	231, 613
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	4 cut(s)	13, 183, 395, 645
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	231, 613
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	4 cut(s)	13, 183, 395, 645
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	295, 695, 698
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	532
BshTI	ACCGGT	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	532
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	277, 445
BspANI	GGCC	1 cut(s)	532
BspDI	ATCGAT	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	4 cut(s)	13, 183, 395, 645
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	231, 613
BssMI	GATC	2 cut(s)	277, 445
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	231, 613
BstACI	GRCGYC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	200
BstKTI	GATC	2 cut(s)	280, 448
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	277, 445
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 484, 662, 671, 680
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	295, 695, 698
Bsu15I	ATCGAT	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	532
BsuTUI	ATCGAT	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	5
CaiI	CAGNNNCTG	1 cut(s)	689
CciI	TCATGA	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	176
CseI	GACGC	2 cut(s)	236, 492
Csp6I	GTAC	5 cut(s)	18, 54, 216, 304, 412
CspAI	ACCGGT	1 cut(s)	342
CviAII	CATG	4 cut(s)	415, 449, 455, 595
CviJI	RGCY	9 cut(s)	60, 204, 242, 299, 532, 548, 656, 665, 689
CviKI_1	RGCY	9 cut(s)	60, 204, 242, 299, 532, 548, 656, 665, 689
CviQI	GTAC	5 cut(s)	18, 54, 216, 304, 412
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	2 cut(s)	279, 447
DpnII	GATC	2 cut(s)	277, 445
Eco130I	CCWWGG	2 cut(s)	231, 613
Eco147I	AGGCCT	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	231, 613
ErhI	CCWWGG	2 cut(s)	231, 613
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	4 cut(s)	418, 452, 458, 598
FaiI	YATR	7 cut(s)	78, 132, 416, 450, 456, 585, 596
FatI	CATG	4 cut(s)	414, 448, 454, 594
Fnu4HI	GCNGC	3 cut(s)	309, 684, 687
Fsp4HI	GCNGC	3 cut(s)	309, 684, 687
FspBI	CTAG	3 cut(s)	57, 243, 666
GluI	GCNGC	3 cut(s)	309, 684, 687
GsaI	CCCAGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	2 cut(s)	236, 492
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	418, 452, 458, 598
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	121, 173
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	2 cut(s)	54, 412
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	4 cut(s)	143, 281, 404, 455
Hpy8I	GTNNAC	2 cut(s)	54, 412
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	14, 103, 467, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 484, 662, 671, 680
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	418, 452, 458, 598
Kzo9I	GATC	2 cut(s)	277, 445
LpnPI	CCDG	8 cut(s)	46, 196, 266, 356, 408, 417, 507, 626
Lsp1109I	GCAGC	3 cut(s)	295, 695, 698
LweI	GCATC	3 cut(s)	90, 454, 683
MaeI	CTAG	3 cut(s)	57, 243, 666
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	279, 447
MboI	GATC	2 cut(s)	277, 445
MboII	GAAGA	4 cut(s)	50, 470, 482, 611
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	8 cut(s)	22, 136, 150, 194, 268, 380, 525, 620
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	170, 335
MnlI	CCTC	6 cut(s)	438, 500, 543, 627, 646, 664
MslI	CAYNNNNRTG	2 cut(s)	453, 459
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	5 cut(s)	305, 484, 662, 671, 680
NdeII	GATC	2 cut(s)	277, 445
NlaIII	CATG	4 cut(s)	418, 452, 458, 598
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	310, 685, 688
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Ppu21I	YACGTR	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	5 cut(s)	19, 55, 217, 305, 413
RsaNI	GTAC	5 cut(s)	18, 54, 216, 304, 412
RseI	CAYNNNNRTG	2 cut(s)	453, 459
SatI	GCNGC	3 cut(s)	309, 684, 687
Sau3AI	GATC	2 cut(s)	277, 445
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	8 cut(s)	19, 62, 221, 244, 301, 541, 619, 691
SfaNI	GCATC	3 cut(s)	90, 454, 683
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	453, 459
SmlI	CTYRAG	2 cut(s)	143, 534
SmoI	CTYRAG	2 cut(s)	143, 534
Sse9I	AATT	8 cut(s)	22, 136, 150, 194, 268, 380, 525, 620
SseBI	AGGCCT	1 cut(s)	532
SspI	AATATT	2 cut(s)	253, 361
SspMI	CTAG	3 cut(s)	57, 243, 666
StuI	AGGCCT	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	231, 613
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	3 cut(s)	176, 256, 512
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	8 cut(s)	22, 136, 150, 194, 268, 380, 525, 620
TatI	WGTACW	2 cut(s)	53, 411
TfiI	GAWTC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	3 cut(s)	308, 683, 686
TspDTI	ATGAA	5 cut(s)	119, 431, 443, 471, 583
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	380
XspI	CTAG	3 cut(s)	57, 243, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.