MD02G1308300.v1.1

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
36353119 .. 36357095
3977 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1308300.v1.1.491

Sequence Viewer

Length: 1281 bp
ATGGCTAATGATGCCGGCTTGAATTGGTCAGTCATTGAAGATGTTACATTGTGTGAATGTTGGGTTCGAATTTCTCATGATCCGATTACGGGTAATGAGCAGAAGTTGCCTCAACTTTGGAAGAAAGTTCATACCACTTTTTGCGAGAAGCTTGGCAATAAAAGAACGGAGCAATCTCTAGCAAGCCGGTGGAAAAAACTCAACAAAGAGTTCATTAGTTGGAGAAACGCCCTCAAACAAGCTCAAGATAATCTTCTAAGTGGCGAAAATTTATCGGATGAAGCACTTCAAGCACAAGTTTGGTACAATGCGGCCAACAAGAACAAGTCATTCACCCGTCATGAATGTTGGAATGTTGTCAAAGGTTGCCCCACATACAAAATTGTAGGAAATGGTCCACCAGTTGTCATGAACGACACCTCTCTTCACTCTACACCAAAAGACGACTCACATGTTCAGGAAGGTGACCCACATGAAGTGTCGGAACCGACCCATCATTCACTTAGGCCTCTTGGTCAAGATGGTGTAACAGAAGATGCTACCTTTGTTCATGGCGAACCTTCTCAAGATGGTAATGGCCCCCCAAAAGTTGATTCTAAGGTGGAAATTCTTCACGAGAAAGTCACAAAGCAAATCATTAAGGAAGGTCATGGTCAAAAACCATCCAAGTATTCAACATGCTTCTTGCACCACAGGGCATGGACTGAAAGCACGGGACACAAGTTTGAAGACACATGGGATGAACAACAACCACTTGAAATGATTTTAGGAAAAGAGGAAAAAGAAATGACTGGCTTGGCTATTGGGGTGTCCAGCATGAAGTCTAGAGAGCGTGCCCTATTACACGTAGGCTGGGAGTTAGGGTATGGGAAAGAAGGGAGCCTTTGTTTTCCGAATGTTCCACCATTGGCTGATATATCATATGAAGTTGAGCTTATTGGATTTGATGAAACCAGAGAAGGGAAAGCTCGTAGTGACATGACTTTGGAGGAAAGGATTGGAGCAGCAGATAGAAGAAAGATGCATGGAAATGCTTTATTTAAAGAGGAAAAACTAGAGGAGGCAATGCAACAGTATGAAATGGCCATAGCATATATTGGTGACGACTTCATGTTCCAGTTGTTTGGGAAGTACCGGGACATGGCTTTGGCAGTTAAAAATCCGTGCCACCTTAACATGGCAGCGTGTTTTATAAAGCTCAAGCGCTATGAAGAAGCCATTGGACAGTGCAGCATTGTACTGGCAGAGGATGAAAACAACGTCAAAGCGCTGTTTAGGTAA

Protein Analysis

427

Amino Acids

48.29

Weight (kDa)

5.76

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 219 - 313 9.7e-13 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1193
AciI CCGC 1 cut(s) 311
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 2 cut(s) 312, 1083
AcsI RAATTY 3 cut(s) 69, 268, 606
AfaI GTAC 3 cut(s) 305, 1133, 1239
AfeI AGCGCT 2 cut(s) 1205, 1269
AfiI CCNNNNNNNGG 4 cut(s) 89, 960, 1141, 1177
AflIII ACRYGT 2 cut(s) 451, 844
AgsI TTSAA 6 cut(s) 22, 38, 290, 675, 728, 758
AjuI GAANNNNNNNTTGG 4 cut(s) 577, 609, 1203, 1235
AluBI AGCT 5 cut(s) 151, 242, 934, 968, 1198
AluI AGCT 5 cut(s) 151, 242, 934, 968, 1198
AlwI GGATC 1 cut(s) 74
Aor51HI AGCGCT 2 cut(s) 1205, 1269
AoxI GGCC 4 cut(s) 312, 506, 577, 1083
ApeKI GCWGC 3 cut(s) 1004, 1181, 1230
ApoI RAATTY 3 cut(s) 69, 268, 606
Asp700I GAANNNNTTC 2 cut(s) 285, 609
AspLEI GCGC 2 cut(s) 1206, 1270
AspS9I GGNCC 2 cut(s) 395, 578
AsuC2I CCSGG 1 cut(s) 1136
AsuHPI GGTGA 3 cut(s) 325, 476, 1112
AsuII TTCGAA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 838
BalI TGGCCA 1 cut(s) 1085
BauI CACGAG 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 1016, 1193, 1242
BccI CCATC 4 cut(s) 501, 515, 563, 670
BcnI CCSGG 1 cut(s) 1136
BfaI CTAG 3 cut(s) 179, 825, 1055
BfoI RGCGCY 2 cut(s) 1207, 1271
BisI GCNGC 4 cut(s) 312, 1005, 1182, 1231
BlsI GCNGC 4 cut(s) 313, 1006, 1183, 1232
Bme1390I CCNGG 1 cut(s) 1136
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 395, 578
BmiI GGNNCC 3 cut(s) 486, 580, 881
BmrFI CCNGG 1 cut(s) 1136
BmsI GCATC 2 cut(s) 526, 1011
BpiI GAAGAC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 67
BpuEI CTTGAG 3 cut(s) 228, 549, 1184
BpuMI CCSGG 1 cut(s) 1136
BsaAI YACGTR 1 cut(s) 847
BsaXI ACNNNNNCTCC 4 cut(s) 848, 871, 878, 901
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 960, 1141, 1177
Bse118I RCCGGY 2 cut(s) 14, 186
Bse1I ACTGG 4 cut(s) 401, 796, 1117, 1245
Bse3DI GCAATG 1 cut(s) 1071
BseGI GGATG 4 cut(s) 283, 662, 745, 1255
BseLI CCNNNNNNNGG 4 cut(s) 89, 960, 1141, 1177
BseMI GCAATG 1 cut(s) 1071
BseNI ACTGG 4 cut(s) 401, 796, 1117, 1245
BseRI GAGGAG 1 cut(s) 1073
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 3 cut(s) 1016, 1193, 1242
BseYI CCCAGC 1 cut(s) 852
BsgI GTGCAG 1 cut(s) 1249
BshFI GGCC 4 cut(s) 314, 508, 579, 1085
BsiSI CCGG 3 cut(s) 15, 187, 1135
BslFI GGGAC 2 cut(s) 729, 1151
BslI CCNNNNNNNGG 4 cut(s) 89, 960, 1141, 1177
BsmFI GGGAC 2 cut(s) 729, 1151
BsnI GGCC 4 cut(s) 314, 508, 579, 1085
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 838
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 311
BspANI GGCC 4 cut(s) 314, 508, 579, 1085
BspHI TCATGA 3 cut(s) 76, 340, 408
BspLI GGNNCC 3 cut(s) 486, 580, 881
BspPI GGATC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 1071
BsrFI RCCGGY 2 cut(s) 14, 186
BsrI ACTGG 4 cut(s) 401, 796, 1117, 1245
BssAI RCCGGY 2 cut(s) 14, 186
BssMI GATC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 614
Bst2BI CACGAG 1 cut(s) 614
Bst4CI ACNGT 2 cut(s) 1074, 1227
Bst6I CTCTTC 1 cut(s) 429
BstAPI GCANNNNNTGC 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 847
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 3 cut(s) 16, 184, 834
BstDEI CTNAG 3 cut(s) 257, 503, 597
BstEII GGTNACC 1 cut(s) 464
BstF5I GGATG 4 cut(s) 283, 662, 745, 1255
BstH2I RGCGCY 2 cut(s) 1207, 1271
BstHHI GCGC 2 cut(s) 1206, 1270
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 3 cut(s) 11, 106, 290
BstNSI RCATGY 2 cut(s) 455, 681
BstPI GGTNACC 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 1134
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 3 cut(s) 1016, 1193, 1242
BstV2I GAAGAC 1 cut(s) 735
BstXI CCANNNNNNTGG 1 cut(s) 1124
BsuRI GGCC 4 cut(s) 314, 508, 579, 1085
BtsCI GGATG 4 cut(s) 283, 662, 745, 1255
BtsIMutI CAGTG 1 cut(s) 1232
Cac8I GCNNGC 3 cut(s) 16, 184, 834
CciI TCATGA 3 cut(s) 76, 340, 408
CfoI GCGC 2 cut(s) 1206, 1270
Cfr10I RCCGGY 2 cut(s) 14, 186
Cfr13I GGNCC 2 cut(s) 395, 578
Csp6I GTAC 3 cut(s) 304, 1132, 1238
CviQI GTAC 3 cut(s) 304, 1132, 1238
DdeI CTNAG 3 cut(s) 257, 503, 597
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 1042
EaeI YGGCCR 2 cut(s) 312, 1083
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco147I AGGCCT 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 395
Eco47III AGCGCT 2 cut(s) 1205, 1269
Eco91I GGTNACC 1 cut(s) 464
EcoO65I GGTNACC 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 1026
FalI AAGNNNNNCTT 6 cut(s) 237, 269, 867, 899, 918, 950
FaqI GGGAC 2 cut(s) 729, 1151
FauNDI CATATG 1 cut(s) 922
Fnu4HI GCNGC 4 cut(s) 312, 1005, 1182, 1231
FokI GGATG 4 cut(s) 290, 649, 752, 1262
Fsp4HI GCNGC 4 cut(s) 312, 1005, 1182, 1231
FspBI CTAG 3 cut(s) 179, 825, 1055
GlaI GCGC 2 cut(s) 1205, 1269
GluI GCNGC 4 cut(s) 312, 1005, 1182, 1231
GsaI CCCAGC 1 cut(s) 856
HaeII RGCGCY 2 cut(s) 1207, 1271
HaeIII GGCC 4 cut(s) 314, 508, 579, 1085
HapII CCGG 3 cut(s) 15, 187, 1135
HhaI GCGC 2 cut(s) 1206, 1270
Hin6I GCGC 2 cut(s) 1204, 1268
HinP1I GCGC 2 cut(s) 1204, 1268
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 2 cut(s) 446, 593
HpaII CCGG 3 cut(s) 15, 187, 1135
HphI GGTGA 3 cut(s) 325, 476, 1112
Hpy166II GTNNAC 1 cut(s) 398
Hpy188I TCNGA 4 cut(s) 84, 277, 484, 894
Hpy188III TCNNGA 9 cut(s) 77, 245, 341, 409, 458, 518, 566, 614, 825
Hpy8I GTNNAC 1 cut(s) 398
HpyAV CCTTC 5 cut(s) 455, 570, 638, 869, 953
HpyCH4III ACNGT 2 cut(s) 1074, 1227
HpyCH4IV ACGT 2 cut(s) 846, 1260
HpyCH4V TGCA 4 cut(s) 688, 1024, 1069, 1230
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 106, 290
HpyF3I CTNAG 3 cut(s) 257, 503, 597
HpySE526I ACGT 2 cut(s) 846, 1260
HspAI GCGC 2 cut(s) 1204, 1268
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 3 cut(s) 169, 879, 1001
Lsp1109I GCAGC 3 cut(s) 1016, 1193, 1242
LweI GCATC 2 cut(s) 526, 1011
MaeI CTAG 3 cut(s) 179, 825, 1055
MaeII ACGT 2 cut(s) 846, 1260
MaeIII GTNAC 6 cut(s) 43, 464, 526, 622, 974, 1100
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 9 cut(s) 50, 133, 245, 416, 545, 602, 740, 1026, 1223
MhlI GDGCHC 1 cut(s) 838
MlsI TGGCCA 1 cut(s) 1085
MluCI AATT 5 cut(s) 22, 69, 268, 381, 606
MluNI TGGCCA 1 cut(s) 1085
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 3 cut(s) 200, 329, 462
Mox20I TGGCCA 1 cut(s) 1085
Mph1103I ATGCAT 1 cut(s) 1026
MroNI GCCGGC 1 cut(s) 14
MroXI GAANNNNTTC 2 cut(s) 285, 609
MscI TGGCCA 1 cut(s) 1085
MseI TTAA 4 cut(s) 639, 1041, 1155, 1173
MslI CAYNNNNRTG 1 cut(s) 1029
Msp20I TGGCCA 1 cut(s) 1085
MspI CCGG 3 cut(s) 15, 187, 1135
MspR9I CCNGG 1 cut(s) 1136
MwoI GCNNNNNNNGC 3 cut(s) 11, 106, 290
NaeI GCCGGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 1136
NdeI CATATG 1 cut(s) 922
NdeII GATC 1 cut(s) 79
NgoMIV GCCGGC 1 cut(s) 14
NlaIV GGNNCC 3 cut(s) 486, 580, 881
NmuCI GTSAC 4 cut(s) 464, 622, 974, 1100
NsiI ATGCAT 1 cut(s) 1026
NspI RCATGY 2 cut(s) 455, 681
NspV TTCGAA 1 cut(s) 67
PagI TCATGA 3 cut(s) 76, 340, 408
PceI AGGCCT 1 cut(s) 508
PciI ACATGT 1 cut(s) 451
PdiI GCCGGC 1 cut(s) 16
PdmI GAANNNNTTC 2 cut(s) 285, 609
PfeI GAWTC 1 cut(s) 593
PkrI GCNGC 4 cut(s) 313, 1006, 1183, 1232
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
Ppu21I YACGTR 1 cut(s) 847
PscI ACATGT 1 cut(s) 451
PsiI TTATAA 1 cut(s) 1193
PspEI GGTNACC 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 852
PspN4I GGNNCC 3 cut(s) 486, 580, 881
PspPI GGNCC 2 cut(s) 395, 578
RsaI GTAC 3 cut(s) 305, 1133, 1239
RsaNI GTAC 3 cut(s) 304, 1132, 1238
RseI CAYNNNNRTG 1 cut(s) 1029
SaqAI TTAA 4 cut(s) 639, 1041, 1155, 1173
SatI GCNGC 4 cut(s) 312, 1005, 1182, 1231
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 395, 578
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 1136
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 2 cut(s) 526, 1011
SfuI TTCGAA 1 cut(s) 67
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 1029
SmlI CTYRAG 3 cut(s) 243, 564, 1199
SmoI CTYRAG 3 cut(s) 243, 564, 1199
Sse9I AATT 5 cut(s) 22, 69, 268, 381, 606
SseBI AGGCCT 1 cut(s) 508
SsiI CCGC 1 cut(s) 311
SspMI CTAG 3 cut(s) 179, 825, 1055
StuI AGGCCT 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 1134
TaaI ACNGT 2 cut(s) 1074, 1227
TaiI ACGT 2 cut(s) 849, 1263
TaqI TCGA 1 cut(s) 67
TasI AATT 5 cut(s) 22, 69, 268, 381, 606
TatI WGTACW 1 cut(s) 1237
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 4 cut(s) 639, 1041, 1155, 1173
Tru9I TTAA 4 cut(s) 639, 1041, 1155, 1173
TscAI CASTG 1 cut(s) 1232
TseFI GTSAC 4 cut(s) 464, 622, 974, 1100
TseI GCWGC 3 cut(s) 1004, 1181, 1230
Tsp45I GTSAC 4 cut(s) 464, 622, 974, 1100
TspGWI ACGGA 2 cut(s) 182, 1152
TspRI CASTG 1 cut(s) 1232
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 3 cut(s) 69, 268, 606
XbaI TCTAGA 1 cut(s) 824
XceI RCATGY 2 cut(s) 455, 681
XmnI GAANNNNTTC 2 cut(s) 285, 609
XspI CTAG 3 cut(s) 179, 825, 1055
Zsp2I ATGCAT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.