pycom02g17760

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000206
Physical Location & Seq
Reverse (-)
15992196 .. 15992594
399 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17760.1

Sequence Viewer

Length: 399 bp
ATGGAAGAACTTACTCACCAAGGTGAATTGACTTTGGCGAGGGAACTGGCGAAATATGAGGGTGATAAGGCTAGAGATGACGCAAAAGCTGCAGCTATTGAGAGAGAATTTCAGGCTAATGAGAGAGAAAGAGACCTACTTAGGCAAGAAAGGGAACATGTTAGAGAAGAAAGACGGGCTCAACAAGATCGTGAGATTATGAACATGCCTTTAGAAGGGAAGTCTCCAAATTCCAAATTTTTTTGGAAGTCAGAGAAAGCGGACGTGGTGCGAAGGAGGCGTGCAAGAGAAGCGATAGCAAGCCAAGGTGGTCCTAGCACCACAAGAGAAGATCATCCTAGCATCACAAATTGGTTAAGTGATGATGAATATAGTACTTTTTGTAATCGGAGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

133

Amino Acids

15.49

Weight (kDa)

5.73

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AcsI RAATTY 3 cut(s) 107, 229, 236
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 157
AjiI CACGTC 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 2 cut(s) 89, 95
AluI AGCT 2 cut(s) 89, 95
Alw26I GTCTC 2 cut(s) 126, 228
ApeKI GCWGC 2 cut(s) 89, 92
ApoI RAATTY 3 cut(s) 107, 229, 236
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 8, 35, 74
AvaII GGWCC 1 cut(s) 311
BanII GRGCYC 2 cut(s) 181, 395
BbvI GCAGC 2 cut(s) 76, 104
BcoDI GTCTC 2 cut(s) 126, 228
BfaI CTAG 3 cut(s) 72, 315, 339
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 90, 93
BlsI GCNGC 2 cut(s) 91, 94
BmcAI AGTACT 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 392
BmsI GCATC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 19, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 19, 304
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 76, 104
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 126, 228
Bso31I GGTCTC 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 181, 395
Bsp143I GATC 2 cut(s) 187, 331
BspACI CCGC 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 392
BspMAI CTGCAG 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 19, 304
BssMI GATC 2 cut(s) 187, 331
BssT1I CCWWGG 2 cut(s) 19, 304
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 282, 301
BstDEI CTNAG 1 cut(s) 140
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 2 cut(s) 190, 334
BstMAI GTCTC 2 cut(s) 126, 228
BstMBI GATC 2 cut(s) 187, 331
BstMWI GCNNNNNNNGC 3 cut(s) 89, 277, 290
BstNSI RCATGY 2 cut(s) 161, 208
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 76, 104
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 282, 301
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 158, 205
CviJI RGCY 7 cut(s) 71, 89, 95, 116, 179, 303, 393
CviKI_1 RGCY 7 cut(s) 71, 89, 95, 116, 179, 303, 393
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 189, 333
DpnII GATC 2 cut(s) 187, 331
Eco130I CCWWGG 2 cut(s) 19, 304
Eco24I GRGCYC 2 cut(s) 181, 395
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 19, 304
EcoT38I GRGCYC 2 cut(s) 181, 395
ErhI CCWWGG 2 cut(s) 19, 304
FaeI CATG 2 cut(s) 161, 208
FaiI YATR 6 cut(s) 57, 159, 200, 206, 372, 397
FatI CATG 2 cut(s) 157, 204
Fnu4HI GCNGC 2 cut(s) 90, 93
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 2 cut(s) 181, 395
Fsp4HI GCNGC 2 cut(s) 90, 93
FspBI CTAG 3 cut(s) 72, 315, 339
GluI GCNGC 2 cut(s) 90, 93
HgaI GACGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 161, 208
HphI GGTGA 3 cut(s) 8, 35, 74
Hpy188I TCNGA 2 cut(s) 253, 390
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 209, 267
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 92, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 277, 290
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 161, 208
Kzo9I GATC 2 cut(s) 187, 331
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 2 cut(s) 32, 98
Lsp1109I GCAGC 2 cut(s) 76, 104
LweI GCATC 1 cut(s) 351
MaeI CTAG 3 cut(s) 72, 315, 339
MaeII ACGT 1 cut(s) 264
MalI GATC 2 cut(s) 189, 333
MboI GATC 2 cut(s) 187, 331
MboII GAAGA 3 cut(s) 17, 179, 341
MhlI GDGCHC 2 cut(s) 181, 395
MluCI AATT 5 cut(s) 26, 107, 229, 236, 349
MnlI CCTC 3 cut(s) 33, 52, 270
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 89, 277, 290
NdeII GATC 2 cut(s) 187, 331
NlaIII CATG 2 cut(s) 161, 208
NlaIV GGNNCC 1 cut(s) 392
NspI RCATGY 2 cut(s) 161, 208
OliI CACNNNNGTG 1 cut(s) 21
PciI ACATGT 1 cut(s) 157
PkrI GCNGC 2 cut(s) 91, 94
PscI ACATGT 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 94
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 2 cut(s) 90, 93
Sau3AI GATC 2 cut(s) 187, 331
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 376
SduI GDGCHC 2 cut(s) 181, 395
SetI ASST 6 cut(s) 25, 91, 97, 138, 267, 310
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 5 cut(s) 26, 107, 229, 236, 349
SsiI CCGC 1 cut(s) 260
SspMI CTAG 3 cut(s) 72, 315, 339
StyI CCWWGG 2 cut(s) 19, 304
TaiI ACGT 1 cut(s) 267
TasI AATT 5 cut(s) 26, 107, 229, 236, 349
TatI WGTACW 1 cut(s) 374
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseI GCWGC 2 cut(s) 89, 92
TspDTI ATGAA 2 cut(s) 215, 381
VpaK11BI GGWCC 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 3 cut(s) 107, 229, 236
XceI RCATGY 2 cut(s) 161, 208
XspI CTAG 3 cut(s) 72, 315, 339
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.