FvH4_5g21900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000206
Physical Location & Seq
Forward (+)
13246481 .. 13250325
3845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21900.t1

Sequence Viewer

Length: 432 bp
ATGAGAGAGGCGGGTAGTTCTTGGACCACCGAGGAGGAAATTCAATTGTGCGAATCATGGGCTACGGTTACAGTACATGAGTATTATGTTGATAATTGGACTGGTGAAACCGCGGTTCGGCCGGCGGCGGCTCTTCAATCTCATTTCAAGCCTTTGAAGAGACTTCTCAAAGCGTGGCACAACGCGAAAATTCAAGTTGGGATTCATAGACCAAGCGGCACCAATCAATTAGATGAGGAGCATCAAATTAACCTAGAGTATATGAGGGTGATTAAAAAGCAATTCGAGCATAAGGAGTGTTGGGAGGCGGTGAAGGATCACCCTTATTTTAGAGATGCACCAACGCCTCAAGCCGAGAGGAGAGGAGAGGAGAGGTTGGAGACTTGGAGGACTGGAGTCCGGTGGCGGAGCACGAAGATGAGATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.97

Weight (kDa)

7.85

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AccII CGCG 2 cut(s) 113, 185
AciI CCGC 8 cut(s) 11, 111, 113, 125, 128, 216, 308, 406
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 2 cut(s) 39, 189
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 5 cut(s) 44, 137, 148, 157, 194
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 154, 374
AlwI GGATC 1 cut(s) 324
AoxI GGCC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 39, 189
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 4 cut(s) 116, 280, 311, 322
AvaII GGWCC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 154, 374
BfaI CTAG 1 cut(s) 254
BisI GCNGC 3 cut(s) 126, 129, 217
BlsI GCNGC 3 cut(s) 127, 130, 218
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 220
BmsI GCATC 2 cut(s) 250, 325
BoxI GACNNNNGTC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 30, 111
BsaWI WCCGGW 1 cut(s) 399
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 106, 397
BseDI CCNNGG 2 cut(s) 30, 111
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 106, 397
BseRI GAGGAG 5 cut(s) 47, 251, 373, 378, 383
BseX3I CGGCCG 1 cut(s) 119
Bsh1236I CGCG 2 cut(s) 113, 185
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 2 cut(s) 122, 400
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 154, 374
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 316, 422
BspACI CCGC 8 cut(s) 11, 111, 113, 125, 128, 216, 308, 406
BspANI GGCC 1 cut(s) 121
BspFNI CGCG 2 cut(s) 113, 185
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 324
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 2 cut(s) 106, 397
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 30, 111
BssMI GATC 2 cut(s) 316, 422
Bst4CI ACNGT 2 cut(s) 67, 73
Bst6I CTCTTC 2 cut(s) 138, 152
BstC8I GCNNGC 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 113, 185
BstKTI GATC 2 cut(s) 319, 425
BstMAI GTCTC 2 cut(s) 154, 374
BstMBI GATC 2 cut(s) 316, 422
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstPAI GACNNNNGTC 1 cut(s) 395
BstUI CGCG 2 cut(s) 113, 185
BstZI CGGCCG 1 cut(s) 119
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 24
Cfr42I CCGCGG 1 cut(s) 114
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 57, 77
CviJI RGCY 5 cut(s) 62, 121, 131, 151, 353
CviKI_1 RGCY 5 cut(s) 62, 121, 131, 151, 353
CviQI GTAC 1 cut(s) 74
DpnI GATC 2 cut(s) 318, 424
DpnII GATC 2 cut(s) 316, 422
EaeI YGGCCR 1 cut(s) 119
EagI CGGCCG 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 138, 152
EarI CTCTTC 2 cut(s) 138, 152
EciI GGCGGA 1 cut(s) 421
EclXI CGGCCG 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 119
FaeI CATG 2 cut(s) 60, 80
FaiI YATR 7 cut(s) 58, 78, 87, 207, 261, 263, 291
FatI CATG 2 cut(s) 56, 76
FauI CCCGC 1 cut(s) 4
Fnu4HI GCNGC 3 cut(s) 126, 129, 217
Fsp4HI GCNGC 3 cut(s) 126, 129, 217
FspBI CTAG 1 cut(s) 254
GluI GCNGC 3 cut(s) 126, 129, 217
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 121
HapII CCGG 2 cut(s) 122, 400
Hin1II CATG 2 cut(s) 60, 80
HinfI GANTC 3 cut(s) 53, 202, 396
HpaII CCGG 2 cut(s) 122, 400
HphI GGTGA 4 cut(s) 116, 280, 311, 322
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 67, 73
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
Hsp92II CATG 2 cut(s) 60, 80
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 2 cut(s) 316, 422
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 238, 408
LpnPI CCDG 4 cut(s) 87, 135, 378, 413
LweI GCATC 2 cut(s) 250, 325
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 318, 424
MboI GATC 2 cut(s) 316, 422
MboII GAAGA 3 cut(s) 125, 169, 427
MfeI CAATTG 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 8 cut(s) 39, 44, 94, 189, 227, 246, 281, 427
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 357
MroNI GCCGGC 1 cut(s) 121
MseI TTAA 2 cut(s) 249, 273
MslI CAYNNNNRTG 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 2 cut(s) 122, 400
MunI CAATTG 1 cut(s) 44
MvnI CGCG 2 cut(s) 113, 185
MwoI GCNNNNNNNGC 1 cut(s) 286
NaeI GCCGGC 1 cut(s) 123
NdeII GATC 2 cut(s) 316, 422
NgoMIV GCCGGC 1 cut(s) 121
NlaIII CATG 2 cut(s) 60, 80
NlaIV GGNNCC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 53, 202
PkrI GCNGC 3 cut(s) 127, 130, 218
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PshAI GACNNNNGTC 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 416
SacII CCGCGG 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 249, 273
SatI GCNGC 3 cut(s) 126, 129, 217
Sau3AI GATC 2 cut(s) 316, 422
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 405
SduI GDGCHC 1 cut(s) 413
SetI ASST 2 cut(s) 255, 377
SfaNI GCATC 2 cut(s) 250, 325
Sfr303I CCGCGG 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 114
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 8 cut(s) 39, 44, 94, 189, 227, 246, 281, 427
SsiI CCGC 8 cut(s) 11, 111, 113, 125, 128, 216, 308, 406
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 67, 73
TaqI TCGA 1 cut(s) 285
TasI AATT 8 cut(s) 39, 44, 94, 189, 227, 246, 281, 427
TatI WGTACW 1 cut(s) 73
TauI GCSGC 3 cut(s) 128, 131, 219
TfiI GAWTC 2 cut(s) 53, 202
Tru1I TTAA 2 cut(s) 249, 273
Tru9I TTAA 2 cut(s) 249, 273
TspDTI ATGAA 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 2 cut(s) 39, 189
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.