pycom09g01710

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
1316093 .. 1316948
856 bp
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UTR
Exon/CDS
Intron
pycom09g01710.3

Sequence Viewer

Length: 699 bp
ATGATCCATTCGATCTCAACGGATCAACGGTGGATATTAATATGCTTTATAAATAAAAAAAATAAAAGAAAAATAGTTTTAAAATTAAGAAAAGTTACTGTTGTGACACGTGGCACAATCTGGACTGAAATTTTTTTAAAAAAAAATTGTTTTTACTTTTCTATAAATACCTTCTCATTATCATCTACCTTACATAACAATTTCATATTTTCTCAACTACTTTCAATCGTATTCCTTTCTTTGTCTCAAAGTTTCAATCCATTTTTTTTCAACAAAATGACCACTGGTGCAGGTACGAATTGGTCGCTTCTTGAAGATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCGCTTACGGGTAATGAGATGCAGTTGCGAAAAATGTGGAGTCTTATTCATACCAATTATCTTGAGAAAATTGATGGAAAAAGAACCAAAGAATCGATATTCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCCTTGGCACAAGCTAGTAGTAATATTCGAAATGGGGAAAATTACTCGGATCAGGTAACAATATATTATTTATTTGATACCCAATATATTATTTATTTGATACCCGCAATTATTTGTTTGTATTATTTATTTGTTACCTACATAATTTATTATTTATTGTTTGTATTATTTATTTGTTACCTATTTACATTATAA

Protein Analysis

233

Amino Acids

27.41

Weight (kDa)

9.4

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 50, 697
Acc36I ACCTGC 1 cut(s) 281
AciI CCGC 1 cut(s) 609
AclWI GGATC 2 cut(s) 30, 561
AcsI RAATTY 1 cut(s) 129
AcvI CACGTG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 3 cut(s) 295, 331, 493
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 5 cut(s) 225, 256, 271, 314, 344
AluBI AGCT 2 cut(s) 336, 518
AluI AGCT 2 cut(s) 336, 518
Alw26I GTCTC 2 cut(s) 249, 495
AlwI GGATC 2 cut(s) 30, 561
ApoI RAATTY 1 cut(s) 129
AseI ATTAAT 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 532
BbrPI CACGTG 1 cut(s) 110
BccI CCATC 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 249, 495
BfaI CTAG 2 cut(s) 333, 519
BfuAI ACCTGC 1 cut(s) 281
BmsI GCATC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 440
Bsa29I ATCGAT 1 cut(s) 452
BsaAI YACGTR 2 cut(s) 110, 495
BsaHI GRCGYC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 507
Bse1I ACTGG 1 cut(s) 289
BseCI ATCGAT 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 309
BshVI ATCGAT 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 249, 495
BsmBI CGTCTC 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 532
Bsp143I GATC 4 cut(s) 3, 12, 22, 553
BspACI CCGC 1 cut(s) 609
BspDI ATCGAT 1 cut(s) 452
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 2 cut(s) 30, 561
BspT104I TTCGAA 1 cut(s) 532
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 4 cut(s) 3, 12, 22, 553
BssNI GRCGYC 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 2 cut(s) 30, 100
BstACI GRCGYC 1 cut(s) 504
BstBAI YACGTR 2 cut(s) 110, 495
BstBI TTCGAA 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 476
BstKTI GATC 4 cut(s) 6, 15, 25, 556
BstMAI GTCTC 2 cut(s) 249, 495
BstMBI GATC 4 cut(s) 3, 12, 22, 553
Bsu15I ATCGAT 1 cut(s) 452
BsuTUI ATCGAT 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 281
ClaI ATCGAT 1 cut(s) 452
CseI GACGC 1 cut(s) 512
Csp6I GTAC 3 cut(s) 294, 330, 492
CviJI RGCY 3 cut(s) 336, 480, 518
CviKI_1 RGCY 3 cut(s) 336, 480, 518
CviQI GTAC 3 cut(s) 294, 330, 492
DdeI CTNAG 1 cut(s) 476
DpnI GATC 4 cut(s) 5, 14, 24, 555
DpnII GATC 4 cut(s) 3, 12, 22, 553
DraI TTTAAA 2 cut(s) 81, 138
Eco130I CCWWGG 1 cut(s) 507
Eco72I CACGTG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 495
FauI CCCGC 1 cut(s) 616
FspBI CTAG 2 cut(s) 333, 519
GsaI CCCAGC 1 cut(s) 340
HgaI GACGC 1 cut(s) 512
Hin1I GRCGYC 1 cut(s) 504
HinfI GANTC 2 cut(s) 397, 449
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 3 cut(s) 121, 311, 419
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 30, 100
HpyCH4IV ACGT 2 cut(s) 109, 494
HpyCH4V TGCA 2 cut(s) 290, 379
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 109, 494
Hsp92I GRCGYC 1 cut(s) 504
Kzo9I GATC 4 cut(s) 3, 12, 22, 553
LpnPI CCDG 5 cut(s) 106, 270, 276, 322, 542
LweI GCATC 1 cut(s) 366
MaeI CTAG 2 cut(s) 333, 519
MaeII ACGT 2 cut(s) 109, 494
MaeIII GTNAC 6 cut(s) 94, 103, 346, 559, 637, 680
MalI GATC 4 cut(s) 5, 14, 24, 555
MboI GATC 4 cut(s) 3, 12, 22, 553
MboII GAAGA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 446
MseI TTAA 4 cut(s) 38, 80, 86, 137
NdeII GATC 4 cut(s) 3, 12, 22, 553
NmuCI GTSAC 1 cut(s) 103
NspV TTCGAA 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 1 cut(s) 449
PleI GAGTC 1 cut(s) 405
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 2 cut(s) 110, 495
PshBI ATTAAT 1 cut(s) 38
PsiI TTATAA 2 cut(s) 50, 697
PspCI CACGTG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 336
RsaI GTAC 3 cut(s) 295, 331, 493
RsaNI GTAC 3 cut(s) 294, 330, 492
SaqAI TTAA 4 cut(s) 38, 80, 86, 137
Sau3AI GATC 4 cut(s) 3, 12, 22, 553
SchI GAGTC 1 cut(s) 406
SfaNI GCATC 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SsiI CCGC 1 cut(s) 609
SspI AATATT 1 cut(s) 529
SspMI CTAG 2 cut(s) 333, 519
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 30, 100
TaiI ACGT 2 cut(s) 112, 497
TaqI TCGA 3 cut(s) 11, 452, 532
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 4 cut(s) 38, 80, 86, 137
Tru9I TTAA 4 cut(s) 38, 80, 86, 137
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 193, 395
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 289
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 1 cut(s) 129
XspI CTAG 2 cut(s) 333, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.