Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008009.1

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

6283 .. 7256

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008009.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgggagattcgggtaccaattggtctaccgacgagcaagttcaattgtgcgattcatgggcgcgtaagaccgtgtgcccgatcaccggcaaacaaataacttcctcaaagttatgggaaaaagttcatgccgattatgtgcaaaattggcaaggtccaccaacaagccgaactcctcaagctctccaatctcagtttcgaacattgaaaagaattctcaaagattggcacaatgcacaaatgacttctcctagtttctccgaaaacgagtctccaattgacttggatgatgaaatagttttggagacaccatcaagctccatgccgagaccaatgggacaaaagagagccaaggaagcaaagaaaaaaggaaagaaggcgcaagatgcagcagaaagtatggctcttgctattcaagccatggcagaatcaactcaagcttctgttgagctagtgaagaaaagaaacgaagaaatggctgctcacacaaagaaggtatttgaatttgaagaggcgaaagaagatgcaagaattatggccatggatactaattccatgacaccacaatcaaaggcttggtggaaaaagaaaaagggagatatcgtagcaaaaacaatgtccgatggtggtagcagcggttgctacatacctcaattcgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

220

Amino Acids

24.65

Weight (kDa)

8.32

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	2 cut(s)	213, 503
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	5 cut(s)	44, 208, 416, 503, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	4 cut(s)	182, 318, 440, 451
AluI	AGCT	4 cut(s)	182, 318, 440, 451
Alw26I	GTCTC	3 cut(s)	276, 299, 322
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	3 cut(s)	389, 479, 633
ApoI	RAATTY	2 cut(s)	213, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	602, 634
Asp700I	GAANNNNTTC	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	64, 382
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	401, 466, 645
BccI	CCATC	2 cut(s)	319, 617
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	3 cut(s)	276, 299, 322
BfaI	CTAG	2 cut(s)	252, 452
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	390, 480, 634
BlsI	GCNGC	3 cut(s)	391, 481, 635
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	16
BmsI	GCATC	2 cut(s)	376, 514
Bpu14I	TTCGAA	1 cut(s)	199
BpuEI	CTTGAG	2 cut(s)	162, 420
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	351, 420, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	351, 420, 540
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	401, 466, 645
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	539
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	3 cut(s)	276, 299, 322
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	322
Bsp119I	TTCGAA	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	81
Bsp19I	CCATGG	2 cut(s)	420, 540
BspACI	CCGC	1 cut(s)	636
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	351, 420, 540
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	3 cut(s)	351, 420, 540
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	504
BstAPI	GCANNNNNTGC	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	2 cut(s)	420, 540
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	64, 382
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	3 cut(s)	276, 299, 322
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 356, 386, 416, 639
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	401, 466, 645
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	2 cut(s)	420, 540
BtsCI	GGATG	1 cut(s)	292
CfoI	GCGC	2 cut(s)	64, 382
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	6 cut(s)	57, 128, 322, 421, 541, 556
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	3 cut(s)	351, 420, 540
Eco31I	GGTCTC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	3 cut(s)	351, 420, 540
ErhI	CCWWGG	3 cut(s)	351, 420, 540
FaeI	CATG	6 cut(s)	60, 131, 325, 424, 544, 559
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	6 cut(s)	56, 127, 321, 420, 540, 555
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	390, 480, 634
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	390, 480, 634
FspBI	CTAG	2 cut(s)	252, 452
GlaI	GCGC	2 cut(s)	63, 381
GluI	GCNGC	3 cut(s)	390, 480, 634
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	2 cut(s)	64, 382
Hin1II	CATG	6 cut(s)	60, 131, 325, 424, 544, 559
Hin6I	GCGC	2 cut(s)	62, 380
HinP1I	GCGC	2 cut(s)	62, 380
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	8, 53, 269, 428
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	27, 158
Hpy188I	TCNGA	2 cut(s)	262, 622
Hpy8I	GTNNAC	2 cut(s)	27, 158
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	370, 487
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	142, 236, 389, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 356, 386, 416, 639
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	6 cut(s)	60, 131, 325, 424, 544, 559
HspAI	GCGC	2 cut(s)	62, 380
KpnI	GGTACC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	1 cut(s)	100
Lsp1109I	GCAGC	3 cut(s)	401, 466, 645
LweI	GCATC	2 cut(s)	376, 514
MaeI	CTAG	2 cut(s)	252, 452
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	4 cut(s)	469, 482, 521, 533
MfeI	CAATTG	3 cut(s)	19, 44, 276
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	9 cut(s)	19, 44, 145, 213, 276, 503, 531, 550, 653
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	115, 186, 505, 660
Mox20I	TGGCCA	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	1 cut(s)	87
MunI	CAATTG	3 cut(s)	19, 44, 276
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	5 cut(s)	148, 356, 386, 416, 639
NcoI	CCATGG	2 cut(s)	420, 540
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	6 cut(s)	60, 131, 325, 424, 544, 559
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	8, 53, 428
PkrI	GCNGC	3 cut(s)	391, 481, 635
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SatI	GCNGC	3 cut(s)	390, 480, 634
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	7 cut(s)	157, 184, 320, 442, 453, 498, 652
SfaNI	GCATC	2 cut(s)	376, 514
SfuI	TTCGAA	1 cut(s)	199
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	177, 435
SmoI	CTYRAG	2 cut(s)	177, 435
Sse9I	AATT	9 cut(s)	19, 44, 145, 213, 276, 503, 531, 550, 653
SsiI	CCGC	1 cut(s)	636
SspMI	CTAG	2 cut(s)	252, 452
StyI	CCWWGG	3 cut(s)	351, 420, 540
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	199, 657
TasI	AATT	9 cut(s)	19, 44, 145, 213, 276, 503, 531, 550, 653
TfiI	GAWTC	3 cut(s)	8, 53, 428
TseI	GCWGC	3 cut(s)	389, 479, 633
TspDTI	ATGAA	3 cut(s)	45, 116, 306
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	2 cut(s)	213, 503
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	2 cut(s)	252, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.