Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

13384942 .. 13386066

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGATAAGCGAGAAATGTGGAGTAAAATTACGAAATCGTTTTGCGATGTACATGGAAAAGATGCCAGATCTAGTCAAGGTCTTCAAGGTCGTTGGAAAAAACTCAACGCATCCTTTACTTGTTGGAAAAACGTCATCTCTCATGCTTCTGGTAATCTGCGTAGTGGGACAAGTTTAGCGGATGAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCGTAACAAATCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTGCCCTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCATGGTATGGATCTACACAGTTCGCCAGAAGCAGACACAGCCGAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAAGAAGTGCCAGAGACCCAACCGACTCGTCAGTCCCTCAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAACGACTACACTAAATATATGGAGGAACTTGCTCGTCAAGGTGAATTGAACATGGCATGGGAAAAGGCTAGAGATGAGGAAAAAGCTACTGCTATGGCAGCAATAATAGCAGCTAATGAGGCTCATGATGCGGCGACTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGATGATTAGAGAAGCACTTCATCGAGAGAATGAGATGCTTAGAGAAGAAAGGATGGCTCAAACAGATCGTGACACTATGAACAAGTCTCTAGTAGGACTGTCTCCGAATTCAAAATATTTTTGGACATCAGAAAAAAGAGATGTCGTGCGAAGGAGGCGTGCAAGAGATGCCGAAACAAGTCAAGGGGGTTCCAGCTACAGAAATCCTAGCAACCAAGATCCTAGCACCACATATCCTAACTCCACAAACTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

306

Amino Acids

34.84

Weight (kDa)

8.53

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AciI	CCGC	2 cut(s)	179, 617
AclWI	GGATC	2 cut(s)	333, 872
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	51
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	5 cut(s)	86, 238, 380, 535, 771
AluBI	AGCT	3 cut(s)	572, 599, 855
AluI	AGCT	3 cut(s)	572, 599, 855
Alw26I	GTCTC	5 cut(s)	179, 407, 622, 750, 765
AlwI	GGATC	2 cut(s)	333, 872
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	584, 596
ApoI	RAATTY	1 cut(s)	766
AsiGI	ACCGGT	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	437
BbsI	GAAGAC	2 cut(s)	74, 387
BbvI	GCAGC	2 cut(s)	596, 608
BccI	CCATC	1 cut(s)	706
BcoDI	GTCTC	5 cut(s)	179, 407, 622, 750, 765
BfaI	CTAG	6 cut(s)	72, 276, 555, 749, 867, 882
BfmI	CTRYAG	1 cut(s)	856
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	3 cut(s)	585, 597, 618
BlsI	GCNGC	3 cut(s)	586, 598, 619
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	850
BmsI	GCATC	6 cut(s)	52, 119, 467, 604, 684, 817
BpiI	GAAGAC	2 cut(s)	74, 387
BpuEI	CTTGAG	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	407
BsaWI	WCCGGW	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	437
BseGI	GGATG	3 cut(s)	110, 187, 717
BseMII	CTCAG	2 cut(s)	451, 615
BseXI	GCAGC	2 cut(s)	596, 608
BshFI	GGCC	1 cut(s)	442
BshTI	ACCGGT	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	3 cut(s)	181, 406, 418
BsmAI	GTCTC	5 cut(s)	179, 407, 622, 750, 765
BsmFI	GGGAC	3 cut(s)	181, 406, 418
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	407
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	68, 325, 724, 877
BspACI	CCGC	2 cut(s)	179, 617
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	450, 616
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	850
BspPI	GGATC	2 cut(s)	333, 872
BspTNI	GGTCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	4 cut(s)	68, 325, 724, 877
BssNI	GRCGYC	1 cut(s)	395
Bst4CI	ACNGT	3 cut(s)	224, 335, 759
BstACI	GRCGYC	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	3 cut(s)	437, 624, 698
BstF5I	GGATG	3 cut(s)	110, 187, 717
BstKTI	GATC	4 cut(s)	71, 328, 727, 880
BstMAI	GTCTC	5 cut(s)	179, 407, 622, 750, 765
BstMBI	GATC	4 cut(s)	68, 325, 724, 877
BstMWI	GCNNNNNNNGC	7 cut(s)	353, 584, 593, 605, 614, 814, 827
BstSFI	CTRYAG	1 cut(s)	856
BstV1I	GCAGC	2 cut(s)	596, 608
BstV2I	GAAGAC	2 cut(s)	74, 387
BstX2I	RGATCY	3 cut(s)	68, 325, 877
BstYI	RGATCY	3 cut(s)	68, 325, 877
Bsu36I	CCTNAGG	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	110, 187, 717
Cac8I	GCNNGC	1 cut(s)	819
CciI	TCATGA	1 cut(s)	610
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	296
CspCI	CAANNNNNGTGG	1 cut(s)	892
CviAII	CATG	7 cut(s)	53, 143, 313, 317, 538, 543, 611
CviJI	RGCY	9 cut(s)	356, 368, 442, 554, 572, 599, 608, 716, 855
CviKI_1	RGCY	9 cut(s)	356, 368, 442, 554, 572, 599, 608, 716, 855
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	3 cut(s)	437, 624, 698
DpnI	GATC	4 cut(s)	70, 327, 726, 879
DpnII	GATC	4 cut(s)	68, 325, 724, 877
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	318
FaeI	CATG	7 cut(s)	56, 146, 316, 320, 541, 546, 614
FaqI	GGGAC	3 cut(s)	181, 406, 418
FatI	CATG	7 cut(s)	52, 142, 312, 316, 537, 542, 610
Fnu4HI	GCNGC	3 cut(s)	585, 597, 618
FokI	GGATG	3 cut(s)	97, 194, 724
Fsp4HI	GCNGC	3 cut(s)	585, 597, 618
FspBI	CTAG	6 cut(s)	72, 276, 555, 749, 867, 882
GluI	GCNGC	3 cut(s)	585, 597, 618
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	7 cut(s)	56, 146, 316, 320, 541, 546, 614
HinfI	GANTC	1 cut(s)	424
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	2 cut(s)	765, 790
Hpy188III	TCNNGA	5 cut(s)	302, 611, 650, 683, 728
HpyAV	CCTTC	2 cut(s)	383, 804
HpyCH4III	ACNGT	3 cut(s)	224, 335, 759
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	215, 316, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	353, 584, 593, 605, 614, 814, 827
HpyF3I	CTNAG	3 cut(s)	437, 624, 698
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	7 cut(s)	56, 146, 316, 320, 541, 546, 614
Kzo9I	GATC	4 cut(s)	68, 325, 724, 877
LpnPI	CCDG	9 cut(s)	79, 135, 310, 315, 354, 411, 423, 424, 865
Lsp1109I	GCAGC	2 cut(s)	596, 608
LweI	GCATC	6 cut(s)	52, 119, 467, 604, 684, 817
MaeI	CTAG	6 cut(s)	72, 276, 555, 749, 867, 882
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	224, 728
MalI	GATC	4 cut(s)	70, 327, 726, 879
MboI	GATC	4 cut(s)	68, 325, 724, 877
MboII	GAAGA	5 cut(s)	74, 392, 413, 471, 716
MflI	RGATCY	3 cut(s)	68, 325, 877
MluCI	AATT	5 cut(s)	27, 258, 285, 530, 766
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	2 cut(s)	74, 104
MnlI	CCTC	6 cut(s)	446, 453, 502, 556, 598, 807
Mph1103I	ATGCAT	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	1 cut(s)	645
MspI	CCGG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	203
MwoI	GCNNNNNNNGC	7 cut(s)	353, 584, 593, 605, 614, 814, 827
NdeII	GATC	4 cut(s)	68, 325, 724, 877
NlaIII	CATG	7 cut(s)	56, 146, 316, 320, 541, 546, 614
NlaIV	GGNNCC	1 cut(s)	850
NmuCI	GTSAC	1 cut(s)	728
NsiI	ATGCAT	1 cut(s)	318
PagI	TCATGA	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	675
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	586, 598, 619
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	850
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	3 cut(s)	68, 325, 877
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	3 cut(s)	585, 597, 618
Sau3AI	GATC	4 cut(s)	68, 325, 724, 877
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	418
SetI	ASST	9 cut(s)	82, 91, 135, 451, 475, 529, 574, 601, 857
SfaNI	GCATC	6 cut(s)	52, 119, 467, 604, 684, 817
SfcI	CTRYAG	1 cut(s)	856
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	5 cut(s)	27, 258, 285, 530, 766
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	2 cut(s)	179, 617
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	6 cut(s)	72, 276, 555, 749, 867, 882
StuI	AGGCCT	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	224, 335, 759
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	649, 682
TasI	AATT	5 cut(s)	27, 258, 285, 530, 766
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	2 cut(s)	584, 596
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	2 cut(s)	668, 752
TspGWI	ACGGA	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	6 cut(s)	72, 276, 555, 749, 867, 882
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.