Rw4G023110

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000206
Physical Location & Seq
Forward (+)
48712686 .. 48715172
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023110.1

Sequence Viewer

Length: 837 bp
ATGGGAGATTCAGGTACCAATTGGTCTACCGACGAGCAAATTCAATTGTGTGATTCATGGGCACGTAAGACTGTTGGTCACGGCCCCAAACAAATAACCTCCTCCAAGTTATGGGAAAAGGTCCATGCTGATTATGTGCAAAATTGGCAAGGTCCACCTACAAGCCGAACTCCTCAAGCTCTCCAATCTCAGTTTCGAATGTTGAAAAAAATTCTCAAAGATTGGCACAATGCACGAATGACCTCCCGTAATCGTATACATAGCGGCACCAATAAGATGGACGAGATGAATCAAACTCAAGGGATCTTCATGAAAAAATATCCCAAGAAATTTGATAAATTTGAATGTTGGGAGAAAGTTAAGTACCACCCGTATTTTGTTGATCCACCATCTAATCATCAACCACTGGCATCATATTCGACAGCTACTGGCTCCGAAAATGAGTCTCCAATTGCGTTGGATGATGATATCGTTTCGGAGACACCATCAAGCTCCATGCCAAGACCAATGGGACAAAAGAGAGCCAAAGAAGCAAAGAAGAAAGGAAAGAAGGCGCAAGATGCAGCAGAAAGTATGGCTCTTGCTATTCAAGCCATGGCCGAATCAACCCAAGCGTCTGTTGAGCTAGTGAAGAAAATAAACAAAGAAATGGCTGCTCACACAAAGAAGGTATTTGAATTTGAAGAGGCGAAAGAAGTTGCAAGAATTATGGCCATGGATACTAATTCCATGACACCACAATCAAAGGCTTGGTGGAAAAAGAAGAAGGGTGATATTGTAGCAAAAACAATGTCCGATGGTGGTAATAGCGGTTGCTACATACCCCAATTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

278

Amino Acids

31.46

Weight (kDa)

9.32

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 109 - 259 5.7e-11 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 2 cut(s) 14, 266
AccB7I CCANNNNNTGG 1 cut(s) 111
AccI GTMKAC 2 cut(s) 26, 256
AciI CCGC 2 cut(s) 264, 810
AclWI GGATC 2 cut(s) 311, 377
AcoI YGGCCR 2 cut(s) 597, 711
AcsI RAATTY 5 cut(s) 39, 210, 329, 338, 677
AfaI GTAC 2 cut(s) 16, 365
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 6 cut(s) 44, 205, 344, 590, 677, 683
AhdI GACNNNNNGTC 1 cut(s) 75
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 4 cut(s) 179, 425, 492, 625
AluI AGCT 4 cut(s) 179, 425, 492, 625
Alw26I GTCTC 2 cut(s) 450, 473
AlwI GGATC 2 cut(s) 311, 377
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 3 cut(s) 82, 597, 711
ApeKI GCWGC 2 cut(s) 563, 653
ApoI RAATTY 5 cut(s) 39, 210, 329, 338, 677
ArsI GACNNNNNNTTYG 2 cut(s) 776, 808
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 3 cut(s) 83, 121, 152
AsuHPI GGTGA 1 cut(s) 782
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 2 cut(s) 121, 152
BaeGI GKGCMC 1 cut(s) 64
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 2 cut(s) 14, 266
BbvI GCAGC 2 cut(s) 575, 640
BccI CCATC 4 cut(s) 271, 397, 493, 791
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciVI GTATCC 1 cut(s) 712
BcoDI GTCTC 2 cut(s) 450, 473
BfaI CTAG 1 cut(s) 626
BfuI GTATCC 1 cut(s) 712
BisI GCNGC 3 cut(s) 265, 564, 654
BlsI GCNGC 3 cut(s) 266, 565, 655
Bme18I GGWCC 2 cut(s) 121, 152
BmeRI GACNNNNNGTC 1 cut(s) 75
BmgT120I GGNCC 3 cut(s) 83, 121, 152
BmiI GGNNCC 4 cut(s) 16, 85, 268, 433
BmsI GCATC 2 cut(s) 419, 550
Bpu14I TTCGAA 1 cut(s) 196
BpuEI CTTGAG 2 cut(s) 159, 282
BsaAI YACGTR 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 594, 714
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 411, 433
BseDI CCNNGG 2 cut(s) 594, 714
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 411, 433
BseRI GAGGAG 2 cut(s) 91, 162
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 2 cut(s) 575, 640
BshFI GGCC 3 cut(s) 84, 599, 713
BshNI GGYRCC 2 cut(s) 14, 266
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 450, 473
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 3 cut(s) 84, 599, 713
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 303, 382
Bsp19I CCATGG 2 cut(s) 594, 714
BspACI CCGC 2 cut(s) 264, 810
BspANI GGCC 3 cut(s) 84, 599, 713
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 4 cut(s) 16, 85, 268, 433
BspPI GGATC 2 cut(s) 311, 377
BspT104I TTCGAA 1 cut(s) 196
BspT107I GGYRCC 2 cut(s) 14, 266
BsrI ACTGG 2 cut(s) 411, 433
BssECI CCNNGG 2 cut(s) 594, 714
BssMI GATC 2 cut(s) 303, 382
BssNAI GTATAC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 594, 714
Bst1107I GTATAC 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 2 cut(s) 594, 714
BstF5I GGATG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 2 cut(s) 306, 385
BstMAI GTCTC 2 cut(s) 450, 473
BstMBI GATC 2 cut(s) 303, 382
BstMWI GCNNNNNNNGC 4 cut(s) 145, 530, 560, 590
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 575, 640
BstX2I RGATCY 1 cut(s) 303
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 303
BstZ17I GTATAC 1 cut(s) 257
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 3 cut(s) 84, 599, 713
BtgI CCRYGG 2 cut(s) 594, 714
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 404
CaiI CAGNNNCTG 1 cut(s) 428
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 556
Cfr13I GGNCC 3 cut(s) 83, 121, 152
CseI GACGC 1 cut(s) 603
Csp6I GTAC 2 cut(s) 15, 364
CviAII CATG 7 cut(s) 57, 125, 310, 496, 595, 715, 730
CviQI GTAC 2 cut(s) 15, 364
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 305, 384
DpnII GATC 2 cut(s) 303, 382
DriI GACNNNNNGTC 1 cut(s) 75
EaeI YGGCCR 2 cut(s) 597, 711
Eam1104I CTCTTC 1 cut(s) 678
Eam1105I GACNNNNNGTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 678
Eco130I CCWWGG 2 cut(s) 594, 714
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 121, 152
EcoRV GATATC 1 cut(s) 469
EcoT14I CCWWGG 2 cut(s) 594, 714
ErhI CCWWGG 2 cut(s) 594, 714
FaeI CATG 7 cut(s) 60, 128, 313, 499, 598, 718, 733
FaqI GGGAC 1 cut(s) 525
FatI CATG 7 cut(s) 56, 124, 309, 495, 594, 714, 729
FblI GTMKAC 2 cut(s) 26, 256
Fnu4HI GCNGC 3 cut(s) 265, 564, 654
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 3 cut(s) 265, 564, 654
FspBI CTAG 1 cut(s) 626
GlaI GCGC 1 cut(s) 555
GluI GCNGC 3 cut(s) 265, 564, 654
HaeIII GGCC 3 cut(s) 84, 599, 713
HgaI GACGC 1 cut(s) 603
HhaI GCGC 1 cut(s) 556
Hin1II CATG 7 cut(s) 60, 128, 313, 499, 598, 718, 733
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HinfI GANTC 5 cut(s) 8, 53, 289, 443, 602
HphI GGTGA 1 cut(s) 782
Hpy166II GTNNAC 3 cut(s) 27, 155, 257
Hpy188I TCNGA 3 cut(s) 436, 478, 796
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 3 cut(s) 27, 155, 257
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 544, 661, 760
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 139, 233, 563, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 530, 560, 590
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 7 cut(s) 60, 128, 313, 499, 598, 718, 733
HspAI GCGC 1 cut(s) 554
KpnI GGTACC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 303, 382
LmnI GCTCC 2 cut(s) 437, 497
LpnPI CCDG 2 cut(s) 392, 414
Lsp1109I GCAGC 2 cut(s) 575, 640
LweI GCATC 2 cut(s) 419, 550
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 305, 384
MboI GATC 2 cut(s) 303, 382
MboII GAAGA 5 cut(s) 298, 550, 643, 695, 775
MfeI CAATTG 3 cut(s) 19, 44, 450
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 713
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 5 cut(s) 109, 112, 183, 253, 679
Mox20I TGGCCA 1 cut(s) 713
MscI TGGCCA 1 cut(s) 713
MseI TTAA 1 cut(s) 360
Msp20I TGGCCA 1 cut(s) 713
MunI CAATTG 3 cut(s) 19, 44, 450
MwoI GCNNNNNNNGC 4 cut(s) 145, 530, 560, 590
NcoI CCATGG 2 cut(s) 594, 714
NdeII GATC 2 cut(s) 303, 382
NlaIII CATG 7 cut(s) 60, 128, 313, 499, 598, 718, 733
NlaIV GGNNCC 4 cut(s) 16, 85, 268, 433
NmuCI GTSAC 1 cut(s) 77
NspV TTCGAA 1 cut(s) 196
PagI TCATGA 1 cut(s) 309
PfeI GAWTC 4 cut(s) 8, 53, 289, 602
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 3 cut(s) 266, 565, 655
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 65
PspN4I GGNNCC 4 cut(s) 16, 85, 268, 433
PspPI GGNCC 3 cut(s) 83, 121, 152
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 2 cut(s) 16, 365
RsaNI GTAC 2 cut(s) 15, 364
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 265, 564, 654
Sau3AI GATC 2 cut(s) 303, 382
Sau96I GGNCC 3 cut(s) 83, 121, 152
SchI GAGTC 1 cut(s) 452
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 2 cut(s) 419, 550
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 2 cut(s) 121, 152
SmlI CTYRAG 2 cut(s) 174, 297
SmoI CTYRAG 2 cut(s) 174, 297
SsiI CCGC 2 cut(s) 264, 810
SspMI CTAG 1 cut(s) 626
StyI CCWWGG 2 cut(s) 594, 714
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 196, 419, 831
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 4 cut(s) 8, 53, 289, 602
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 2 cut(s) 563, 653
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 45, 298, 302, 326
TspRI CASTG 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 2 cut(s) 121, 152
XapI RAATTY 5 cut(s) 39, 210, 329, 338, 677
XmiI GTMKAC 2 cut(s) 26, 256
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.