Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

4948501 .. 4950332

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGACCACTGGTGCAGGTACGAATTGGTCGCTTATTGAAGATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCGCTTACGGGTAATGAGATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAGTTTTCTTGAGAAAATTGGTGGGAAAAGAACCAAAGAATCGATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCTTTGGCACAAGCTAGTAATAATATTCGAAGTGGGGAAAATTACTCGGATCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGGTGGGAATGTTGGAATATTGTCAAAGATTGTCCTAAATTTAGAGTTGTGCCAGTCGGTCCAGAAGTGCACATGAACAGCACCCCTCTACACTCTACACCCGATCATGTTCATGAAGATGATGCAGAAGAAGTGCCTGAAACGCCCCTCCCTGAACGCGCGTCGGGTTCGACCCGTTTTCCAATTAGGCCTCAAGGTAAGAAGGCTTCAAAGAGAAAAGGTAGTGCTTCCAAGAACGATTATGCAAAGTTCATGGAAGAACTTACTCGCCAAGGTGAATTGACTTTGGCAAGGGACCTGGCGAAAGATGAGGCTGAAAAGGCTAGAGAGGCATCAAAACAAGCAGCTGTTGAGAGAGAATTTTATGCTAATGAGAGAGAAAGAGAGCTACTTAGGCAAGAAAGGGAACATGTTAGAGAAGAAAGACGGGCTCAACAAGATCGTGAGATTATGAACATGTCTTTAGAAGGGAAGTCTCCAAATTCTAAATTTTTTTGGAAATCAGAGAAAGCGGACGTTGTGCGAAGGAGGCGTGCAAGAGAAGCAATAGCAAGCCAAGGTGGTTCTAGCACCGCAACAGAAGATCATCCTAGCACCACAAATTGGTTAAGTGATGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

322

Amino Acids

36.77

Weight (kDa)

7.12

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	111 - 286	1.5e-08	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AccB7I	CCANNNNNTGG	2 cut(s)	189, 945
AccII	CGCG	2 cut(s)	501, 503
AciI	CCGC	2 cut(s)	854, 915
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	4 cut(s)	380, 701, 823, 830
AfaI	GTAC	4 cut(s)	19, 55, 217, 305
AfiI	CCNNNNNNNGG	2 cut(s)	189, 945
AflIII	ACRYGT	2 cut(s)	751, 798
AgeI	ACCGGT	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	38, 68, 290, 340, 552
AjnI	CCWGG	1 cut(s)	639
AluBI	AGCT	5 cut(s)	60, 242, 299, 689, 730
AluI	AGCT	5 cut(s)	60, 242, 299, 689, 730
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	219, 822
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	530
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	308, 686
ApoI	RAATTY	4 cut(s)	380, 701, 823, 830
AsiGI	ACCGGT	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	401, 637
AsuHPI	GGTGA	1 cut(s)	629
AsuII	TTCGAA	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	401, 637
BaeGI	GKGCMC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	775
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	295, 698
BciT130I	CCWGG	1 cut(s)	641
BcoDI	GTCTC	2 cut(s)	219, 822
BfaI	CTAG	5 cut(s)	57, 243, 666, 909, 933
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	2 cut(s)	309, 687
BlsI	GCNGC	2 cut(s)	310, 688
Bme1390I	CCNGG	1 cut(s)	641
Bme18I	GGWCC	2 cut(s)	401, 637
BmgT120I	GGNCC	2 cut(s)	401, 637
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	3 cut(s)	90, 454, 683
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	164, 519
Bsa29I	ATCGAT	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	613, 898
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 945
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	4 cut(s)	13, 135, 183, 395
BseBI	CCWGG	1 cut(s)	641
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	613, 898
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	2 cut(s)	189, 945
BseNI	ACTGG	4 cut(s)	13, 135, 183, 395
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	295, 698
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	2 cut(s)	501, 503
BshFI	GGCC	1 cut(s)	532
BshTI	ACCGGT	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	2 cut(s)	189, 945
BsmAI	GTCTC	2 cut(s)	219, 822
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	532
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	414, 775
Bsp143I	GATC	4 cut(s)	277, 445, 781, 925
BspACI	CCGC	2 cut(s)	854, 915
BspANI	GGCC	1 cut(s)	532
BspDI	ATCGAT	1 cut(s)	176
BspFNI	CGCG	2 cut(s)	501, 503
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	638
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	342
BsrI	ACTGG	4 cut(s)	13, 135, 183, 395
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	613, 898
BssMI	GATC	4 cut(s)	277, 445, 781, 925
BssT1I	CCWWGG	2 cut(s)	613, 898
Bst2UI	CCWGG	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	876, 895
BstDEI	CTNAG	2 cut(s)	200, 734
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	2 cut(s)	501, 503
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	4 cut(s)	280, 448, 784, 928
BstMAI	GTCTC	2 cut(s)	219, 822
BstMBI	GATC	4 cut(s)	277, 445, 781, 925
BstMWI	GCNNNNNNNGC	7 cut(s)	305, 484, 662, 671, 736, 871, 884
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	2 cut(s)	755, 802
BstSCI	CCNGG	1 cut(s)	639
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	2 cut(s)	501, 503
BstV1I	GCAGC	2 cut(s)	295, 698
Bsu15I	ATCGAT	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	532
BsuTUI	ATCGAT	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	928
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	876, 895
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	503
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	401, 637
ClaI	ATCGAT	1 cut(s)	176
CseI	GACGC	2 cut(s)	236, 492
Csp6I	GTAC	4 cut(s)	18, 54, 216, 304
CspAI	ACCGGT	1 cut(s)	342
CviAII	CATG	6 cut(s)	415, 449, 455, 595, 752, 799
CviQI	GTAC	4 cut(s)	18, 54, 216, 304
DdeI	CTNAG	2 cut(s)	200, 734
DpnI	GATC	4 cut(s)	279, 447, 783, 927
DpnII	GATC	4 cut(s)	277, 445, 781, 925
Eco130I	CCWWGG	2 cut(s)	613, 898
Eco147I	AGGCCT	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	401, 637
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	2 cut(s)	613, 898
EcoT38I	GRGCYC	1 cut(s)	775
ErhI	CCWWGG	2 cut(s)	613, 898
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	6 cut(s)	418, 452, 458, 598, 755, 802
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	6 cut(s)	414, 448, 454, 594, 751, 798
Fnu4HI	GCNGC	2 cut(s)	309, 687
FokI	GGATG	1 cut(s)	915
FriOI	GRGCYC	1 cut(s)	775
Fsp4HI	GCNGC	2 cut(s)	309, 687
FspBI	CTAG	5 cut(s)	57, 243, 666, 909, 933
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	2 cut(s)	309, 687
GsaI	CCCAGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	2 cut(s)	236, 492
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	6 cut(s)	418, 452, 458, 598, 755, 802
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	121, 173
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	2 cut(s)	54, 412
Hpy188I	TCNGA	2 cut(s)	277, 847
Hpy188III	TCNNGA	5 cut(s)	143, 281, 404, 455, 785
Hpy8I	GTNNAC	2 cut(s)	54, 412
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	3 cut(s)	538, 803, 861
HpyCH4IV	ACGT	2 cut(s)	218, 858
HpyCH4V	TGCA	6 cut(s)	14, 103, 412, 467, 587, 878
HpyF10VI	GCNNNNNNNGC	7 cut(s)	305, 484, 662, 671, 736, 871, 884
HpyF3I	CTNAG	2 cut(s)	200, 734
HpySE526I	ACGT	2 cut(s)	218, 858
Hsp92II	CATG	6 cut(s)	418, 452, 458, 598, 755, 802
HspAI	GCGC	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	277, 445, 781, 925
Lsp1109I	GCAGC	2 cut(s)	295, 698
LweI	GCATC	3 cut(s)	90, 454, 683
MaeI	CTAG	5 cut(s)	57, 243, 666, 909, 933
MaeII	ACGT	2 cut(s)	218, 858
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	279, 447, 783, 927
MboI	GATC	4 cut(s)	277, 445, 781, 925
MboII	GAAGA	6 cut(s)	50, 470, 482, 611, 773, 935
MhlI	GDGCHC	2 cut(s)	414, 775
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	170, 335
MnlI	CCTC	6 cut(s)	438, 500, 543, 646, 664, 864
MseI	TTAA	1 cut(s)	950
MslI	CAYNNNNRTG	2 cut(s)	453, 459
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	641
MvnI	CGCG	2 cut(s)	501, 503
MwoI	GCNNNNNNNGC	7 cut(s)	305, 484, 662, 671, 736, 871, 884
NdeII	GATC	4 cut(s)	277, 445, 781, 925
NlaIII	CATG	6 cut(s)	418, 452, 458, 598, 755, 802
NlaIV	GGNNCC	1 cut(s)	638
NspI	RCATGY	2 cut(s)	755, 802
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	532
PciI	ACATGT	2 cut(s)	751, 798
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	173
PflMI	CCANNNNNTGG	2 cut(s)	189, 945
PinAI	ACCGGT	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	310, 688
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Ppu21I	YACGTR	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	637
PscI	ACATGT	2 cut(s)	751, 798
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	2 cut(s)	401, 637
PspPPI	RGGWCCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	4 cut(s)	19, 55, 217, 305
RsaNI	GTAC	4 cut(s)	18, 54, 216, 304
RseI	CAYNNNNRTG	2 cut(s)	453, 459
SaqAI	TTAA	1 cut(s)	950
SatI	GCNGC	2 cut(s)	309, 687
Sau3AI	GATC	4 cut(s)	277, 445, 781, 925
Sau96I	GGNCC	2 cut(s)	401, 637
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	2 cut(s)	414, 775
SfaNI	GCATC	3 cut(s)	90, 454, 683
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	2 cut(s)	401, 637
SmiMI	CAYNNNNRTG	2 cut(s)	453, 459
SmlI	CTYRAG	2 cut(s)	143, 534
SmoI	CTYRAG	2 cut(s)	143, 534
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	2 cut(s)	854, 915
SspI	AATATT	2 cut(s)	253, 361
SspMI	CTAG	5 cut(s)	57, 243, 666, 909, 933
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	2 cut(s)	613, 898
TaiI	ACGT	2 cut(s)	221, 861
TaqI	TCGA	3 cut(s)	176, 256, 512
TaqII	GACCGA	1 cut(s)	389
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	950
Tru9I	TTAA	1 cut(s)	950
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	308, 686
TspDTI	ATGAA	6 cut(s)	119, 431, 443, 471, 583, 809
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	2 cut(s)	189, 945
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	401, 637
XapI	RAATTY	4 cut(s)	380, 701, 823, 830
XceI	RCATGY	2 cut(s)	755, 802
XspI	CTAG	5 cut(s)	57, 243, 666, 909, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.