Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

9195642 .. 9196671

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGAGATCCAGGTACTAATTGGCAAGTTGATGAAGATATTCAATTATGCGATTCGTGGGCGCGTAAAACCGTTTGTCCCATCACCGGCAAAGCTATAACCGCCACTGGGTTATGGGAAAAGGTTCATGCCGATTACATTGAAAATTGGCAAGGTCCACCAAGCACCCGATCCCCTCAAGCTCTCCAATCTCATTTTCGAGGGTTGAAGAAAATGCTCAAAGATTGGCACAATGCACAAATGACTTCCCGTAACCGTATAGCAAGCGGCACCAATCGAATGGACGAGGAAAATCAAACTCAAGGGATCTTCATGAAAAAATATCCCAAACCCTTTGATAAATTTGGATGTTGGAATGTAATTAAGCACCACCCGTATTTCAAAGATCCACCATCTAATCCTCAACCTCCGGAGTGGGATTCGACAACTAGTGCCTCTCAAAACGAGTCTCCAATTAGCTTGGATGATGATATAGTTTTGGAGACACCCTCAAGCTCCGAGCCAAGACCTATGGGACAAAAGAGAGCCAAAGAAGCAAAGAAGAAAGGAAAGAAGGCACAAGATGCAGCAGAAAGTATGGCTCTTGCCATTCAAGCCATGGCCGAGTCAACCCAAGCTTCTGTTGAGCTAGTGAAGAGAAGAAACGAGGAAATGACTGCTCATACAAAGAAGGTATTTGAATTTGAAGAGGCAAAAGAAGATGCAAGAATTATGGCAATGGATACTAATTCCATGACTCCACAATCAAAGGCTTGGTGGAAAAAGAGGAAGAGTGATATCATAGCGAAAACAATGCCTAATAGTGGTAGTAGTGGTTGCTACATACCTGAATTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

279

Amino Acids

31.57

Weight (kDa)

8.22

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	110 - 260	2.5e-15	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccII	CGCG	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	2 cut(s)	102, 267
AclWI	GGATC	4 cut(s)	2, 165, 314, 380
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	3 cut(s)	341, 680, 830
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	86, 108, 803
AgsI	TTSAA	7 cut(s)	44, 143, 208, 382, 593, 680, 686
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	10
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	6 cut(s)	95, 182, 459, 495, 617, 628
AluI	AGCT	6 cut(s)	95, 182, 459, 495, 617, 628
Alw26I	GTCTC	2 cut(s)	453, 476
AlwI	GGATC	4 cut(s)	2, 165, 314, 380
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	1 cut(s)	600
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	3 cut(s)	341, 680, 830
Asp700I	GAANNNNTTC	2 cut(s)	39, 123
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	2 cut(s)	89, 400
BcgI	CGANNNNNNTGC	2 cut(s)	775, 809
BciT130I	CCWGG	1 cut(s)	12
BciVI	GTATCC	1 cut(s)	715
BcoDI	GTCTC	2 cut(s)	453, 476
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	2 cut(s)	429, 629
BfuI	GTATCC	1 cut(s)	715
BisI	GCNGC	2 cut(s)	268, 567
BlsI	GCNGC	2 cut(s)	269, 568
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	12
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	553, 691
BmuI	ACTGGG	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpuEI	CTTGAG	3 cut(s)	162, 285, 475
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 108, 803
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	723
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	2 cut(s)	353, 469
BseLI	CCNNNNNNNGG	3 cut(s)	86, 108, 803
BseMI	GCAATG	1 cut(s)	723
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	602
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	87, 410
BslFI	GGGAC	2 cut(s)	63, 528
BslI	CCNNNNNNNGG	3 cut(s)	86, 108, 803
BsmAI	GTCTC	2 cut(s)	453, 476
BsmFI	GGGAC	2 cut(s)	63, 528
BsnI	GGCC	1 cut(s)	602
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	7, 170, 306, 385
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	2 cut(s)	102, 267
BspANI	GGCC	1 cut(s)	602
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	4 cut(s)	2, 165, 314, 380
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	723
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	4 cut(s)	7, 170, 306, 385
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	73, 257
Bst6I	CTCTTC	3 cut(s)	629, 681, 764
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	265
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	353, 469
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	10, 173, 309, 388
BstMAI	GTCTC	2 cut(s)	453, 476
BstMBI	GATC	4 cut(s)	7, 170, 306, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 533, 563, 593
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	578
BstX2I	RGATCY	3 cut(s)	7, 306, 385
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	3 cut(s)	7, 306, 385
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	602
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	353, 469
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	265
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	4 cut(s)	128, 313, 598, 733
CviQI	GTAC	1 cut(s)	15
DpnI	GATC	4 cut(s)	9, 172, 308, 387
DpnII	GATC	4 cut(s)	7, 170, 306, 385
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	629, 681, 764
EarI	CTCTTC	3 cut(s)	629, 681, 764
Eco130I	CCWWGG	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	4 cut(s)	131, 316, 601, 736
FaqI	GGGAC	2 cut(s)	63, 528
FatI	CATG	4 cut(s)	127, 312, 597, 732
Fnu4HI	GCNGC	2 cut(s)	268, 567
FokI	GGATG	2 cut(s)	360, 476
Fsp4HI	GCNGC	2 cut(s)	268, 567
FspBI	CTAG	2 cut(s)	429, 629
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	268, 567
HaeIII	GGCC	1 cut(s)	602
HapII	CCGG	2 cut(s)	87, 410
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	131, 316, 601, 736
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	5 cut(s)	53, 419, 446, 605, 736
HpaII	CCGG	2 cut(s)	87, 410
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	158, 609
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	2 cut(s)	313, 410
Hpy8I	GTNNAC	2 cut(s)	158, 609
HpyAV	CCTTC	2 cut(s)	547, 664
HpyCH4III	ACNGT	2 cut(s)	73, 257
HpyCH4V	TGCA	3 cut(s)	236, 566, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 533, 563, 593
Hsp92II	CATG	4 cut(s)	131, 316, 601, 736
HspAI	GCGC	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	7, 170, 306, 385
LmnI	GCTCC	1 cut(s)	500
LpnPI	CCDG	4 cut(s)	24, 93, 100, 423
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	2 cut(s)	553, 691
MaeI	CTAG	2 cut(s)	429, 629
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	4 cut(s)	9, 172, 308, 387
MboI	GATC	4 cut(s)	7, 170, 306, 385
MboII	GAAGA	9 cut(s)	47, 220, 301, 553, 646, 651, 698, 710, 781
MflI	RGATCY	3 cut(s)	7, 306, 385
MlyI	GAGTC	3 cut(s)	455, 614, 730
MmeI	TCCRAC	1 cut(s)	332
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	2 cut(s)	39, 123
MseI	TTAA	1 cut(s)	363
MspI	CCGG	2 cut(s)	87, 410
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	101, 533, 563, 593
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	4 cut(s)	7, 170, 306, 385
NlaIII	CATG	4 cut(s)	131, 316, 601, 736
NlaIV	GGNNCC	1 cut(s)	271
NmeAIII	GCCGAG	1 cut(s)	628
PagI	TCATGA	1 cut(s)	312
PdmI	GAANNNNTTC	2 cut(s)	39, 123
PfeI	GAWTC	2 cut(s)	53, 419
PkrI	GCNGC	2 cut(s)	269, 568
PleI	GAGTC	3 cut(s)	454, 613, 730
PpsI	GAGTC	3 cut(s)	454, 613, 730
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	155
PsuI	RGATCY	3 cut(s)	7, 306, 385
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	268, 567
Sau3AI	GATC	4 cut(s)	7, 170, 306, 385
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	3 cut(s)	455, 614, 730
ScrFI	CCNGG	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	553, 691
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	177, 300, 490
SmoI	CTYRAG	3 cut(s)	177, 300, 490
SpeI	ACTAGT	1 cut(s)	428
SsiI	CCGC	2 cut(s)	102, 267
SspMI	CTAG	2 cut(s)	429, 629
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	73, 257
TaqI	TCGA	4 cut(s)	199, 277, 422, 834
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	53, 419
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	4 cut(s)	48, 116, 301, 329
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	3 cut(s)	341, 680, 830
XcmI	CCANNNNNNNNNTGG	2 cut(s)	18, 595
XmnI	GAANNNNTTC	2 cut(s)	39, 123
XspI	CTAG	2 cut(s)	429, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.