pycom16g21120

gpi-anchored protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
19339679 .. 19340158
480 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g21120.1

Sequence Viewer

Length: 480 bp
ATGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATATGGAGGAACTTGCTCGCCAAGGTGAACTGAACATGGCATGGGAAAAGGCTAGAGATGAGGAAAAAGCTACTGCTATGGCAGCAATAATAGCAGCTACTGAGGCTCGTGATGCGGCGGTTGAGAGACAAAGAGAAATAGTTAATCAAGAGAACGAGATGATTAGAGAAGCACTTCATCGAGAGAATGAGATGCTTAGAGAAGAAAGGATGGTTCAAGTAGATCGTGACACTATAAACAAGTCTTTAGTAGGACTGTCTCCGAATTCAAAATATTTTTGGACATCAGAAAAAAGAGATGTCGTGCGAAAGAGGCGTGCAAGAGATGCCGAAACAAGTCAAGGGGGTTCCAGCTACAGAAATCCTAGCAACCAAGATCCTAGCATCACATATCCTAACTCCACAGACTTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.26

Weight (kDa)

8.77

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 179, 182
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 328
AgsI TTSAA 2 cut(s) 281, 333
AluBI AGCT 3 cut(s) 134, 161, 417
AluI AGCT 3 cut(s) 134, 161, 417
Alw26I GTCTC 2 cut(s) 184, 327
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 146, 158
ApoI RAATTY 1 cut(s) 328
Asp700I GAANNNNTTC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 101
BauI CACGAG 1 cut(s) 171
BbvI GCAGC 2 cut(s) 158, 170
BccI CCATC 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 184, 327
BfaI CTAG 3 cut(s) 117, 429, 444
BfmI CTRYAG 1 cut(s) 418
BisI GCNGC 3 cut(s) 147, 159, 180
BlsI GCNGC 3 cut(s) 148, 160, 181
BmiI GGNNCC 1 cut(s) 412
BmsI GCATC 5 cut(s) 29, 166, 246, 379, 456
BsaJI CCNNGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 158, 170
BsmAI GTCTC 2 cut(s) 184, 327
Bsp143I GATC 2 cut(s) 286, 439
BspACI CCGC 2 cut(s) 179, 182
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 412
BspPI GGATC 1 cut(s) 434
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 286, 439
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 82, 381
BstDEI CTNAG 2 cut(s) 165, 260
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 2 cut(s) 289, 442
BstMAI GTCTC 2 cut(s) 184, 327
BstMBI GATC 2 cut(s) 286, 439
BstMWI GCNNNNNNNGC 6 cut(s) 146, 155, 167, 176, 376, 389
BstSFI CTRYAG 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 158, 170
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 82, 381
CaiI CAGNNNCTG 1 cut(s) 164
CspCI CAANNNNNGTGG 1 cut(s) 454
CviAII CATG 2 cut(s) 100, 105
CviJI RGCY 5 cut(s) 116, 134, 161, 170, 417
CviKI_1 RGCY 5 cut(s) 116, 134, 161, 170, 417
DdeI CTNAG 2 cut(s) 165, 260
DpnI GATC 2 cut(s) 288, 441
DpnII GATC 2 cut(s) 286, 439
Eco130I CCWWGG 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 103, 108
FaiI YATR 8 cut(s) 66, 68, 101, 106, 143, 299, 454, 478
FatI CATG 2 cut(s) 99, 104
Fnu4HI GCNGC 3 cut(s) 147, 159, 180
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 147, 159, 180
FspBI CTAG 3 cut(s) 117, 429, 444
GluI GCNGC 3 cut(s) 147, 159, 180
Hin1II CATG 2 cut(s) 103, 108
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 2 cut(s) 327, 352
Hpy188III TCNNGA 4 cut(s) 173, 212, 245, 290
Hpy8I GTNNAC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 155, 167, 176, 376, 389
HpyF3I CTNAG 2 cut(s) 165, 260
Hsp92II CATG 2 cut(s) 103, 108
Kzo9I GATC 2 cut(s) 286, 439
LpnPI CCDG 1 cut(s) 427
Lsp1109I GCAGC 2 cut(s) 158, 170
LweI GCATC 5 cut(s) 29, 166, 246, 379, 456
MaeI CTAG 3 cut(s) 117, 429, 444
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 288, 441
MboI GATC 2 cut(s) 286, 439
MboII GAAGA 2 cut(s) 33, 278
MflI RGATCY 1 cut(s) 439
MluCI AATT 1 cut(s) 328
MnlI CCTC 5 cut(s) 15, 64, 118, 160, 369
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 1 cut(s) 207
MwoI GCNNNNNNNGC 6 cut(s) 146, 155, 167, 176, 376, 389
NdeII GATC 2 cut(s) 286, 439
NlaIII CATG 2 cut(s) 103, 108
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 237
PkrI GCNGC 3 cut(s) 148, 160, 181
PspN4I GGNNCC 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 439
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 3 cut(s) 147, 159, 180
Sau3AI GATC 2 cut(s) 286, 439
SetI ASST 6 cut(s) 13, 37, 91, 136, 163, 419
SfaNI GCATC 5 cut(s) 29, 166, 246, 379, 456
SfcI CTRYAG 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 328
SsiI CCGC 2 cut(s) 179, 182
SspI AATATT 1 cut(s) 338
SspMI CTAG 3 cut(s) 117, 429, 444
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 244
TasI AATT 1 cut(s) 328
TauI GCSGC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 146, 158
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 230
XapI RAATTY 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 3 cut(s) 117, 429, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.