Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

9457606 .. 9462556

Gene Structure 4951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCTTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAATTACTCGAAGCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGGTGGGAATGTTGGAATATTGTCAAAGATTGTCCTAAATTTAGAGTTGTGCCAGTCGGTCCAGAAGTGCACATGAACAGCACCCCTCTACACTCTACACCCGATCATGTTCATGAAGATGATGCAGAAGAAGTGCCCGAAACGCCCCTCCCTGAACGCGCGTCGGGTTCGACCCGTTTTCCAATTAGGCCTCAAGGTAAGAAGGCTTCAAAGAGAAAAGGGAGTGCTTCGAAGAACGATTATGCAAAGTTTATGGAAGAACTTACTCGCCAAGGTGAATTGACTTTGGCGAGGGACCTGGCGAAAGATGAGGCTGATAAGGCTAGAGAGGCATCAAAACAAGCAGCTGTTGAAAGAGAATTTTATGCTAATGAGAGAGAAAGAGAGCTACTTAGGCAAGAAAGGGAACATGTTAGAGAAGAAAGACGGGCTCAACAAGATCGTGAGATTATGAACATGTCTTTAGAAGGGAAGTCTCCAAATTCTAAATTTTTTTGGAAGTCAGAGAAAGCGGACGTTGTGCGAAGGAGGCGTGCAAGAGAAGCAATAGCAAGCCAAGGTGGTTCTAGCACTGCAAGAGAAGATCATCCTAGCACCACAAATTGGTTAAGTGATGATGAATATAGTACTTTTTGTAATCGGAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

272

Amino Acids

31.27

Weight (kDa)

9.15

Isoelectric Point (pI)

68.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	52 - 227	6.2e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	12, 768
AccII	CGCG	2 cut(s)	324, 326
AciI	CCGC	1 cut(s)	677
AcsI	RAATTY	4 cut(s)	203, 524, 646, 653
AfaI	GTAC	3 cut(s)	40, 128, 793
AfiI	CCNNNNNNNGG	2 cut(s)	12, 768
AflIII	ACRYGT	2 cut(s)	574, 621
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	113, 163, 375, 518
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	4 cut(s)	65, 122, 512, 553
AluI	AGCT	4 cut(s)	65, 122, 512, 553
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	42, 645
Alw44I	GTGCAC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	131, 509
ApoI	RAATTY	4 cut(s)	203, 524, 646, 653
AsiGI	ACCGGT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	224, 460
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	2 cut(s)	79, 395
AvaII	GGWCC	2 cut(s)	224, 460
BaeGI	GKGCMC	2 cut(s)	237, 303
BanII	GRGCYC	2 cut(s)	598, 812
BarI	GAAGNNNNNNTAC	2 cut(s)	355, 387
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	118, 521
BciT130I	CCWGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	42, 645
BfaI	CTAG	4 cut(s)	66, 489, 732, 756
BisI	GCNGC	2 cut(s)	132, 510
BlsI	GCNGC	2 cut(s)	133, 511
BmcAI	AGTACT	1 cut(s)	793
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	2 cut(s)	224, 460
BmgT120I	GGNCC	2 cut(s)	224, 460
BmiI	GGNNCC	2 cut(s)	461, 809
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	277, 506
Bpu14I	TTCGAA	2 cut(s)	79, 395
BpuEI	CTTGAG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	436, 721
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 768
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	6, 218
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	436, 721
BseGI	GGATG	1 cut(s)	751
BseLI	CCNNNNNNNGG	2 cut(s)	12, 768
BseNI	ACTGG	2 cut(s)	6, 218
BseSI	GKGCMC	2 cut(s)	237, 303
BseXI	GCAGC	2 cut(s)	118, 521
Bsh1236I	CGCG	2 cut(s)	324, 326
BshFI	GGCC	1 cut(s)	355
BshTI	ACCGGT	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	12, 768
BsmAI	GTCTC	2 cut(s)	42, 645
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	355
Bsp119I	TTCGAA	2 cut(s)	79, 395
Bsp1286I	GDGCHC	4 cut(s)	237, 303, 598, 812
Bsp143I	GATC	3 cut(s)	268, 604, 748
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	1 cut(s)	355
BspFNI	CGCG	2 cut(s)	324, 326
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	461, 809
BspT104I	TTCGAA	2 cut(s)	79, 395
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	6, 218
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	436, 721
BssMI	GATC	3 cut(s)	268, 604, 748
BssT1I	CCWWGG	2 cut(s)	436, 721
Bst2UI	CCWGG	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	42
BstBI	TTCGAA	2 cut(s)	79, 395
BstC8I	GCNNGC	2 cut(s)	699, 718
BstDEI	CTNAG	2 cut(s)	23, 557
BstF5I	GGATG	1 cut(s)	751
BstFNI	CGCG	2 cut(s)	324, 326
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	3 cut(s)	271, 607, 751
BstMAI	GTCTC	2 cut(s)	42, 645
BstMBI	GATC	3 cut(s)	268, 604, 748
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 307, 485, 494, 559, 694, 707
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	2 cut(s)	578, 625
BstSCI	CCNGG	1 cut(s)	462
BstSLI	GKGCMC	2 cut(s)	237, 303
BstUI	CGCG	2 cut(s)	324, 326
BstV1I	GCAGC	2 cut(s)	118, 521
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	751
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	699, 718
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	224, 460
CseI	GACGC	2 cut(s)	59, 315
Csp6I	GTAC	3 cut(s)	39, 127, 792
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	5 cut(s)	238, 272, 278, 575, 622
CviQI	GTAC	3 cut(s)	39, 127, 792
DdeI	CTNAG	2 cut(s)	23, 557
DpnI	GATC	3 cut(s)	270, 606, 750
DpnII	GATC	3 cut(s)	268, 604, 748
Eco130I	CCWWGG	2 cut(s)	436, 721
Eco147I	AGGCCT	1 cut(s)	355
Eco24I	GRGCYC	2 cut(s)	598, 812
Eco47I	GGWCC	2 cut(s)	224, 460
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	2 cut(s)	436, 721
EcoT38I	GRGCYC	2 cut(s)	598, 812
ErhI	CCWWGG	2 cut(s)	436, 721
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	5 cut(s)	241, 275, 281, 578, 625
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	5 cut(s)	237, 271, 277, 574, 621
Fnu4HI	GCNGC	2 cut(s)	132, 510
FokI	GGATG	1 cut(s)	738
FriOI	GRGCYC	2 cut(s)	598, 812
Fsp4HI	GCNGC	2 cut(s)	132, 510
FspBI	CTAG	4 cut(s)	66, 489, 732, 756
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	2 cut(s)	132, 510
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	2 cut(s)	59, 315
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	5 cut(s)	241, 275, 281, 578, 625
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	120
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	670, 807
Hpy188III	TCNNGA	3 cut(s)	227, 278, 608
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	361, 626, 684
HpyCH4IV	ACGT	2 cut(s)	41, 681
HpyCH4V	TGCA	5 cut(s)	235, 290, 410, 701, 740
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 307, 485, 494, 559, 694, 707
HpyF3I	CTNAG	2 cut(s)	23, 557
HpySE526I	ACGT	2 cut(s)	41, 681
Hsp92II	CATG	5 cut(s)	241, 275, 281, 578, 625
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	3 cut(s)	268, 604, 748
LmnI	GCTCC	1 cut(s)	807
LpnPI	CCDG	8 cut(s)	19, 89, 179, 231, 240, 330, 449, 476
Lsp1109I	GCAGC	2 cut(s)	118, 521
LweI	GCATC	2 cut(s)	277, 506
MaeI	CTAG	4 cut(s)	66, 489, 732, 756
MaeII	ACGT	2 cut(s)	41, 681
MalI	GATC	3 cut(s)	270, 606, 750
MboI	GATC	3 cut(s)	268, 604, 748
MboII	GAAGA	6 cut(s)	293, 305, 409, 434, 596, 758
MhlI	GDGCHC	4 cut(s)	237, 303, 598, 812
MluCI	AATT	9 cut(s)	17, 91, 203, 348, 443, 524, 646, 653, 766
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	261, 323, 366, 450, 469, 487, 687
MseI	TTAA	1 cut(s)	773
MslI	CAYNNNNRTG	2 cut(s)	276, 282
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	2 cut(s)	324, 326
MwoI	GCNNNNNNNGC	7 cut(s)	128, 307, 485, 494, 559, 694, 707
NdeII	GATC	3 cut(s)	268, 604, 748
NlaIII	CATG	5 cut(s)	241, 275, 281, 578, 625
NlaIV	GGNNCC	2 cut(s)	461, 809
NspI	RCATGY	2 cut(s)	578, 625
NspV	TTCGAA	2 cut(s)	79, 395
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	355
PciI	ACATGT	2 cut(s)	574, 621
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PflMI	CCANNNNNTGG	2 cut(s)	12, 768
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	133, 511
Ppu21I	YACGTR	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	460
PscI	ACATGT	2 cut(s)	574, 621
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	461, 809
PspPI	GGNCC	2 cut(s)	224, 460
PspPPI	RGGWCCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	3 cut(s)	40, 128, 793
RsaNI	GTAC	3 cut(s)	39, 127, 792
RseI	CAYNNNNRTG	2 cut(s)	276, 282
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	2 cut(s)	132, 510
Sau3AI	GATC	3 cut(s)	268, 604, 748
Sau96I	GGNCC	2 cut(s)	224, 460
ScaI	AGTACT	1 cut(s)	793
ScrFI	CCNGG	1 cut(s)	464
SduI	GDGCHC	4 cut(s)	237, 303, 598, 812
SfaNI	GCATC	2 cut(s)	277, 506
SfuI	TTCGAA	2 cut(s)	79, 395
SinI	GGWCC	2 cut(s)	224, 460
SmiMI	CAYNNNNRTG	2 cut(s)	276, 282
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	9 cut(s)	17, 91, 203, 348, 443, 524, 646, 653, 766
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	677
SspI	AATATT	2 cut(s)	76, 184
SspMI	CTAG	4 cut(s)	66, 489, 732, 756
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	2 cut(s)	436, 721
TaiI	ACGT	2 cut(s)	44, 684
TaqI	TCGA	4 cut(s)	79, 98, 335, 395
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	9 cut(s)	17, 91, 203, 348, 443, 524, 646, 653, 766
TatI	WGTACW	1 cut(s)	791
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	2 cut(s)	131, 509
TspDTI	ATGAA	5 cut(s)	254, 266, 294, 632, 798
TspRI	CASTG	1 cut(s)	742
Van91I	CCANNNNNTGG	2 cut(s)	12, 768
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	224, 460
XapI	RAATTY	4 cut(s)	203, 524, 646, 653
XceI	RCATGY	2 cut(s)	578, 625
XspI	CTAG	4 cut(s)	66, 489, 732, 756
ZrmI	AGTACT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.