pycom02g17780

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
16006468 .. 16007215
748 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17780.1

Sequence Viewer

Length: 657 bp
ATGAGTTTTAAAATTAAAAAAAGTTACCGTTGTGACACGTGGCACAATCTGGAGTTGAATAAAAATTTAAAAAAAATTCAAAAAAATTCAAAAAAATTCAAAAAAAAATCTGAAAAATCTGAAAAAAATTGTTTTTACTTTTCTATAAATACCTTCTCATTATCATCTACCTTACACAACAATTTCATATTTTCTCAACTACTTTCAATCACATTCCTTTCTTTGTCTCAAAGTTTGAATCCATTTTTTTTCAACAAAATGACCACTGGTGCAGATACGAATTGGTCGCTTATTGAAGATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCTCTTACGGGTAATGAGATGCAGTTGCGAGAGATGTGGAGTCTTATTCATACCAATTTTCTTGAGAAAATTGGTGGGAAAAGAACCAAAGAATCGATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCCTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAATTACTCGAATCAGGTAACAATATATTATGTATTTGATACCCAAATTTACATTATAATTATTTGTTTGTATTATTTATTTGTTATCTACATAATTTATTATTTATTGTTTGTATTATTTATTTGTTACTGA

Protein Analysis

219

Amino Acids

25.74

Weight (kDa)

9.34

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AccB7I CCANNNNNTGG 1 cut(s) 447
AcsI RAATTY 5 cut(s) 64, 75, 85, 95, 570
AcvI CACGTG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 2 cut(s) 313, 475
AfiI CCNNNNNNNGG 1 cut(s) 447
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 9 cut(s) 58, 80, 90, 100, 207, 238, 253, 296, 326
AluBI AGCT 2 cut(s) 318, 500
AluI AGCT 2 cut(s) 318, 500
Alw26I GTCTC 2 cut(s) 231, 477
ApoI RAATTY 5 cut(s) 64, 75, 85, 95, 570
AsuII TTCGAA 1 cut(s) 514
BbrPI CACGTG 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 231, 477
BfaI CTAG 2 cut(s) 315, 501
BmsI GCATC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 434
BsaAI YACGTR 2 cut(s) 39, 477
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 2 cut(s) 271, 441
BseCI ATCGAT 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 271, 441
BseYI CCCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 291
BshVI ATCGAT 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 2 cut(s) 231, 477
BsmBI CGTCTC 1 cut(s) 477
Bsp119I TTCGAA 1 cut(s) 514
BspDI ATCGAT 1 cut(s) 434
BspT104I TTCGAA 1 cut(s) 514
BsrI ACTGG 2 cut(s) 271, 441
BssECI CCNNGG 1 cut(s) 489
BssNI GRCGYC 1 cut(s) 486
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 486
BstBAI YACGTR 2 cut(s) 39, 477
BstBI TTCGAA 1 cut(s) 514
BstDEI CTNAG 1 cut(s) 458
BstMAI GTCTC 2 cut(s) 231, 477
Bsu15I ATCGAT 1 cut(s) 434
BsuTUI ATCGAT 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 264
ClaI ATCGAT 1 cut(s) 434
CseI GACGC 1 cut(s) 494
Csp6I GTAC 2 cut(s) 312, 474
CviJI RGCY 3 cut(s) 318, 462, 500
CviKI_1 RGCY 3 cut(s) 318, 462, 500
CviQI GTAC 2 cut(s) 312, 474
DdeI CTNAG 1 cut(s) 458
DraI TTTAAA 2 cut(s) 10, 69
Eco130I CCWWGG 1 cut(s) 489
Eco72I CACGTG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 477
FaiI YATR 8 cut(s) 146, 188, 336, 390, 550, 555, 581, 617
FspBI CTAG 2 cut(s) 315, 501
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 1 cut(s) 71
HgaI GACGC 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 486
HinfI GANTC 4 cut(s) 238, 379, 431, 535
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 112, 121
Hpy188III TCNNGA 2 cut(s) 50, 401
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 38, 476
HpyCH4V TGCA 2 cut(s) 272, 361
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 2 cut(s) 38, 476
Hsp92I GRCGYC 1 cut(s) 486
LpnPI CCDG 5 cut(s) 35, 252, 304, 454, 524
LweI GCATC 1 cut(s) 348
MaeI CTAG 2 cut(s) 315, 501
MaeII ACGT 2 cut(s) 38, 476
MaeIII GTNAC 5 cut(s) 23, 32, 328, 541, 650
MboII GAAGA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 428
MseI TTAA 3 cut(s) 9, 15, 68
NmuCI GTSAC 1 cut(s) 32
NspV TTCGAA 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PfeI GAWTC 3 cut(s) 238, 431, 535
PflMI CCANNNNNTGG 1 cut(s) 447
PleI GAGTC 1 cut(s) 387
PmaCI CACGTG 1 cut(s) 39
PmlI CACGTG 1 cut(s) 39
PpsI GAGTC 1 cut(s) 387
Ppu21I YACGTR 2 cut(s) 39, 477
PsiI TTATAA 1 cut(s) 581
PspCI CACGTG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 318
RsaI GTAC 2 cut(s) 313, 475
RsaNI GTAC 2 cut(s) 312, 474
SaqAI TTAA 3 cut(s) 9, 15, 68
SchI GAGTC 1 cut(s) 388
SetI ASST 7 cut(s) 41, 155, 173, 320, 479, 502, 543
SfaNI GCATC 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 514
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SspI AATATT 1 cut(s) 511
SspMI CTAG 2 cut(s) 315, 501
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 2 cut(s) 41, 479
TaqI TCGA 3 cut(s) 434, 514, 533
TatI WGTACW 1 cut(s) 311
TfiI GAWTC 3 cut(s) 238, 431, 535
Tru1I TTAA 3 cut(s) 9, 15, 68
Tru9I TTAA 3 cut(s) 9, 15, 68
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 175, 377
TspRI CASTG 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 447
XapI RAATTY 5 cut(s) 64, 75, 85, 95, 570
XspI CTAG 2 cut(s) 315, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.