Rh5AG498300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000206
Physical Location & Seq
Forward (+)
84495876 .. 84497393
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG498300.1

Sequence Viewer

Length: 417 bp
ATGATTCACCAATTCAGTCTACTGACAACGATGAAGAGTGCATCGCCGAGCCATCTGATGAAAGACTTCCGGGAAGAAAGGCTCAAAAGAGAGATGCTAAGCTCAAAGGGAAGATTAGCGAAAAGCAAGATCGATATATTCAAGCAATGGAAAACATTGCATTTAATAGTGAAGCTAGTAGAGAGGCCACAAGAATCAGAGATGGAAGAAAATAGAAAGCACATCGAGTGGCAGCAACAAATGGAAGTGGAAAAGCAACAACTAGAACTACAAAAAGTGCAACTAGAAATCCAAAAGGAGGAAAATTGGGTTATGGCTAAAGACGTTAGCATAATGACTCCAGAATCAAAAGCATGGTGGAAGAAAAGAAAGAAAGCTATCCGTGACAAAACCTCAGATGATTGGGAGGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.71

Weight (kDa)

9.4

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 3 cut(s) 102, 175, 377
AluI AGCT 3 cut(s) 102, 175, 377
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 232
Asp700I GAANNNNTTC 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 71
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 60, 196
BcnI CCSGG 1 cut(s) 71
BfaI CTAG 3 cut(s) 176, 263, 284
BisI GCNGC 1 cut(s) 233
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 50, 84
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 132
BsaXI ACNNNNNCTCC 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse3DI GCAATG 2 cut(s) 152, 155
BseCI ATCGAT 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 2 cut(s) 152, 155
BseMII CTCAG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 298
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 129
Bsp1720I GCTNAGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 407
BspDI ATCGAT 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 152, 155
BssMI GATC 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 98, 394
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 132
CviAII CATG 1 cut(s) 354
CviJI RGCY 7 cut(s) 51, 82, 102, 175, 187, 317, 377
CviKI_1 RGCY 7 cut(s) 51, 82, 102, 175, 187, 317, 377
DdeI CTNAG 2 cut(s) 98, 394
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
FaeI CATG 1 cut(s) 357
FaiI YATR 4 cut(s) 137, 314, 332, 355
FatI CATG 1 cut(s) 353
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 3 cut(s) 176, 263, 284
GluI GCNGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 70
Hin1II CATG 1 cut(s) 357
HinfI GANTC 4 cut(s) 4, 194, 337, 344
HpaII CCGG 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 3 cut(s) 57, 199, 397
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 3 cut(s) 41, 160, 280
HpyF3I CTNAG 2 cut(s) 98, 394
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 1 cut(s) 357
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 2 cut(s) 83, 354
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 50, 84
MaeI CTAG 3 cut(s) 176, 263, 284
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 383
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 5 cut(s) 46, 86, 123, 218, 373
MluCI AATT 2 cut(s) 11, 304
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 4 cut(s) 177, 292, 400, 403
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 164
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 71
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 357
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 3 cut(s) 4, 194, 344
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 1 cut(s) 234
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 129
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 71
SetI ASST 5 cut(s) 104, 177, 327, 379, 395
SfaNI GCATC 2 cut(s) 50, 84
Sse9I AATT 2 cut(s) 11, 304
SspMI CTAG 3 cut(s) 176, 263, 284
StyD4I CCNGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 132, 225
TasI AATT 2 cut(s) 11, 304
TfiI GAWTC 3 cut(s) 4, 194, 344
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 2 cut(s) 47, 74
TspGWI ACGGA 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 3 cut(s) 176, 263, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.