Rmu_sc0004048.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004048.1
OG0000206
Physical Location & Seq
Forward (+)
57303 .. 57830
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004048.1_g000013.1.cds

Sequence Viewer

Length: 528 bp
atgaaaaaatatcccaagaaatttgataaatttgaatgttgggagaaagttaagtatcacccgtattttgttgatccaccatctaatcctcaaccaccggcatcatattcgacaactactgcctccgaaaatgagtctccaattgagttggatgatgatatcgtttcggagacaccatcaagctccatgccaagatcaatgggacaaaagagagccaaagaagcaaagaagaaaggaaagaaggcccaaaatgcagctgaaagtatggctcttgctattcaagccatggccgaatcaaccccagcttctgttgagctattgaagaaaagaaatgaagaaatggcctctcacataaagaaggtatttgaatttgaagaggcaaaagaagatgcaagaattatggccatggatactaattccatgacaccacaatcaaaggcttggtggaaaaagaagaagggtgatatcatagcaaaaacaatgtccgatggtggtagtagcggttgctacataccccaattcgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.65

Weight (kDa)

8.68

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 501
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 2 cut(s) 288, 402
AcsI RAATTY 3 cut(s) 20, 29, 368
AgsI TTSAA 5 cut(s) 35, 281, 322, 368, 374
AluBI AGCT 4 cut(s) 183, 257, 305, 316
AluI AGCT 4 cut(s) 183, 257, 305, 316
Alw26I GTCTC 2 cut(s) 141, 164
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 4 cut(s) 243, 288, 342, 402
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 3 cut(s) 20, 29, 368
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 50, 473
BalI TGGCCA 1 cut(s) 404
BbvI GCAGC 1 cut(s) 266
BccI CCATC 3 cut(s) 88, 184, 482
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciVI GTATCC 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 141, 164
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 244
BmsI GCATC 2 cut(s) 110, 379
BsaJI CCNNGG 2 cut(s) 285, 405
Bse118I RCCGGY 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 285, 405
BseGI GGATG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 301
BshFI GGCC 4 cut(s) 245, 290, 344, 404
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 141, 164
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 4 cut(s) 245, 290, 344, 404
Bsp143I GATC 2 cut(s) 73, 194
Bsp19I CCATGG 2 cut(s) 285, 405
BspACI CCGC 1 cut(s) 501
BspANI GGCC 4 cut(s) 245, 290, 344, 404
BspPI GGATC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 285, 405
BssMI GATC 2 cut(s) 73, 194
BssT1I CCWWGG 2 cut(s) 285, 405
Bst6I CTCTTC 1 cut(s) 369
BstDSI CCRYGG 2 cut(s) 285, 405
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 2 cut(s) 76, 197
BstMAI GTCTC 2 cut(s) 141, 164
BstMBI GATC 2 cut(s) 73, 194
BstMWI GCNNNNNNNGC 3 cut(s) 221, 251, 281
BstV1I GCAGC 1 cut(s) 266
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 4 cut(s) 245, 290, 344, 404
BtgI CCRYGG 2 cut(s) 285, 405
BtsCI GGATG 1 cut(s) 157
CaiI CAGNNNCTG 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 244
CviAII CATG 4 cut(s) 187, 286, 406, 421
DpnI GATC 2 cut(s) 75, 196
DpnII GATC 2 cut(s) 73, 194
EaeI YGGCCR 2 cut(s) 288, 402
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 285, 405
Eco32I GATATC 2 cut(s) 160, 466
EcoRV GATATC 2 cut(s) 160, 466
EcoT14I CCWWGG 2 cut(s) 285, 405
ErhI CCWWGG 2 cut(s) 285, 405
FaeI CATG 4 cut(s) 190, 289, 409, 424
FaqI GGGAC 1 cut(s) 216
FatI CATG 4 cut(s) 186, 285, 405, 420
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
GsaI CCCAGC 1 cut(s) 305
HaeIII GGCC 4 cut(s) 245, 290, 344, 404
HapII CCGG 1 cut(s) 98
Hin1II CATG 4 cut(s) 190, 289, 409, 424
HinfI GANTC 2 cut(s) 134, 293
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 50, 473
Hpy188I TCNGA 3 cut(s) 127, 169, 487
HpyAV CCTTC 3 cut(s) 235, 352, 451
HpyCH4V TGCA 2 cut(s) 254, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 251, 281
Hsp92II CATG 4 cut(s) 190, 289, 409, 424
Kzo9I GATC 2 cut(s) 73, 194
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 111, 315
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 2 cut(s) 110, 379
MalI GATC 2 cut(s) 75, 196
MboI GATC 2 cut(s) 73, 194
MboII GAAGA 6 cut(s) 241, 334, 347, 386, 398, 466
MfeI CAATTG 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 7 cut(s) 20, 29, 141, 368, 396, 415, 518
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 4 cut(s) 99, 133, 355, 370
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 221, 251, 281
NcoI CCATGG 2 cut(s) 285, 405
NdeII GATC 2 cut(s) 73, 194
NlaIII CATG 4 cut(s) 190, 289, 409, 424
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 73, 194
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 143
SetI ASST 5 cut(s) 185, 259, 307, 318, 363
SfaNI GCATC 2 cut(s) 110, 379
Sse9I AATT 7 cut(s) 20, 29, 141, 368, 396, 415, 518
SsiI CCGC 1 cut(s) 501
StyI CCWWGG 2 cut(s) 285, 405
TaqI TCGA 2 cut(s) 110, 522
TasI AATT 7 cut(s) 20, 29, 141, 368, 396, 415, 518
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 17, 348
XapI RAATTY 3 cut(s) 20, 29, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.