FvH4_5g38071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000206
Physical Location & Seq
Reverse (-)
28111837 .. 28114995
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38071.t1

Sequence Viewer

Length: 375 bp
ATGGCTGAGTCAACACAAGCTTCTGTTGAGCTAGTGAGGCAAAGAAATGAAGAAATTGCCGCTCACTCAAAGAGGGTTATGGAATTAGAAGAGGCGAAAGAAGATGCAAGAATTATGGGCAAGGATACTAGTAATATGTCTCCAGATGAAAAGCGTTGGTGGAAAACAAGGAAGAGAAGTGTTATGGCAAAAACTTTGTTTGATGATAGTAGCAGTGATTGCTATATACCTGGTTTTCATCGTTTTGAGATTCTTCTTGCGTCGAGGAGGTTTGAGCCAAAGTGGAGATTTTCAGAAAGGGAAGACTTCTGGTTTAGCTTGAAAAAGAATTGTTCGCGCAAACCTTCTCTAGCATCCATTCCTTTCACTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.63

Weight (kDa)

9.23

Isoelectric Point (pI)

64.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 337
AciI CCGC 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 1 cut(s) 322
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 20, 31, 318
AluI AGCT 3 cut(s) 20, 31, 318
Alw26I GTCTC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 309
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 144
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 3 cut(s) 32, 129, 350
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 2 cut(s) 94, 362
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 280
Bsh1236I CGCG 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 144
BspACI CCGC 1 cut(s) 60
BspFNI CGCG 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 231
Bst6I CTCTTC 2 cut(s) 84, 167
BstAPI GCANNNNNTGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 37, 219
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstUI CGCG 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 309
BsuI GTATCC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 220, 366
CfoI GCGC 1 cut(s) 339
CseI GACGC 1 cut(s) 249
CsiI ACCWGGT 1 cut(s) 229
CviJI RGCY 5 cut(s) 5, 20, 31, 277, 318
CviKI_1 RGCY 5 cut(s) 5, 20, 31, 277, 318
DdeI CTNAG 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 372
Eam1104I CTCTTC 2 cut(s) 84, 167
EarI CTCTTC 2 cut(s) 84, 167
EcoRII CCWGG 1 cut(s) 229
FaiI YATR 6 cut(s) 80, 116, 137, 185, 225, 227
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 32, 129, 350
GlaI GCGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 126
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 339
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 8, 250
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 354
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 219
HpyF3I CTNAG 1 cut(s) 6
HspAI GCGC 1 cut(s) 337
LpnPI CCDG 5 cut(s) 156, 216, 243, 295, 354
LweI GCATC 2 cut(s) 94, 362
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 3 cut(s) 32, 129, 350
MbiI CCGCTC 1 cut(s) 62
MboII GAAGA 6 cut(s) 62, 101, 113, 184, 245, 314
MluCI AATT 4 cut(s) 54, 83, 111, 328
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 5 cut(s) 30, 66, 85, 258, 261
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 2 cut(s) 37, 219
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
SatI GCNGC 1 cut(s) 60
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 231
SetI ASST 6 cut(s) 22, 33, 232, 272, 320, 346
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 2 cut(s) 94, 362
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 4 cut(s) 54, 83, 111, 328
SsiI CCGC 1 cut(s) 60
SspMI CTAG 3 cut(s) 32, 129, 350
StyD4I CCNGG 1 cut(s) 229
TaqI TCGA 1 cut(s) 263
TasI AATT 4 cut(s) 54, 83, 111, 328
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 2 cut(s) 220, 373
TspDTI ATGAA 3 cut(s) 63, 162, 227
TspRI CASTG 2 cut(s) 220, 373
XspI CTAG 3 cut(s) 32, 129, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.